Tests

add --init-new-pipeline #384

	name: Tests

	on:
	push:
	branches:
	- main
	- dev
	workflow_dispatch:
	pull_request:
	branches-ignore: []
	schedule:
	- cron: '0 0 3 * *'

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5
	matrix:
	python: [3.8, 3.9,'3.10', '3.11']
	fail-fast: false


	steps:

	- name: install graphviz
	run: \|
	sudo apt update
	sudo apt-get install -y graphviz

	- name: checkout git repo
	uses: actions/checkout@v2

	- name: Set up Python 3.X
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python }}

	- name: Install dependencies
	run: \|
	pip install coveralls pytest-cov

	- name: install package itself
	run: \|
	pip install poetry
	pip install kaleido #required on github CI by plotly
	poetry install

	- name: testing
	run: \|
	poetry run pytest --cov-report term --cov=sequana_pipetools
	- name: coveralls
	run: \|
	echo $COVERALLS_REPO_TOKEN
	coveralls --service=github
	env:
	GITHUB_TOKEN: ${{ github.token }}

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