diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 97d391e..0b3a5f4 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -39,7 +39,7 @@ jobs:
     - name: conda
       run: |
         conda install -c conda-forge --quiet mamba  python=${{ matrix.python }}
-        mamba install -c bioconda -c conda-forge --quiet -y bowtie samtools bamtools pigz
+        mamba install -c bioconda -c conda-forge --quiet -y bowtie samtools bamtools pigz bedtools
 
     - name: Install dependencies
       run: |