GitHub - sebhtml/Paper-Replication-2012

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Name		Name	Last commit message	Last commit date
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Assembly-Overlaps		Assembly-Overlaps
Build-Input-Files-for-Gene-Ontology		Build-Input-Files-for-Gene-Ontology
Build-Input-Files-for-GreenGenes-Taxonomy		Build-Input-Files-for-GreenGenes-Taxonomy
Build-Input-Files-for-NCBI-Taxonomy		Build-Input-Files-for-NCBI-Taxonomy
Fetch-Samples-from-NIH_Human_Microbiome_Project		Fetch-Samples-from-NIH_Human_Microbiome_Project
MetaVelvet-Assemblies-of-6-NIH-HMP-Samples		MetaVelvet-Assemblies-of-6-NIH-HMP-Samples
Principal-Component-Analysis		Principal-Component-Analysis
RayCommunities-on-Samples-from-NIH_Human_Microbiome_Project		RayCommunities-on-Samples-from-NIH_Human_Microbiome_Project
RayMeta-Assemblies-of-6-NIH-HMP-Samples		RayMeta-Assemblies-of-6-NIH-HMP-Samples
RayMeta-Qin-et-al.		RayMeta-Qin-et-al.
Simulation-100-genomes		Simulation-100-genomes
Simulation-1000-genomes		Simulation-1000-genomes
Software-Validation-on-Mock-Community-Reads		Software-Validation-on-Mock-Community-Reads
Validation-of-RayMeta-1000g		Validation-of-RayMeta-1000g
Validation-of-RayMeta-100g		Validation-of-RayMeta-100g
README		README

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This repository contains all the scripts required to reproduce results from
this paper:

	Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette, Jacques Corbeil
	Scalable de novo metagenome assembly and profiling
	in revision, $journalName, 2012

Ray Meta and Ray Communities are available from:
	
	- http://denovoassembler.sourceforge.net/

If you feel adventurous or you want to try the development version,
you will need these git repositories:

	- https://github.com/sebhtml/ray
	- https://github.com/sebhtml/RayPlatform