NEWS.md

title
changeLog

snHiC

v0.2.1 - August 3^rd 2024

• Added Zenodo doi.

v0.2.0 - June 21^st 2023

• New analyses implemented: Tad calling also by GENOVA, Loop detection also by Mustache, stripes detection by STRIPENN, differential contacts caling by SELFISH.
• Yaml environment updated
• Providing of a bash script for the installation, fixing and configuration of packages/softwares not included in the yaml file
• Reorganization of the manual in a GitHub-Wiki
• Implementation of the becnhmarking in the snakemake pipeline
• Re-formatting and update of the config file
• Providing of testa fastq files as well as resulting outputs
• Pipeline has been published on Bioinformatics Advances (DOI: 10.1093/bioadv/vbad080)

v0.1.1 - February 10^th 2023

• Implemented the use of bwa-mem2 instead of bwa in order to reduce the time required for the mapping. It follows that both snakemake file and yaml-formatted environment files have been updated.
• Added a folder containing the dcHiC logs in the compartments folder.

v0.1.0 - December 29^th 2022

• First release of the pipeline!