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82 Open 467 Closed
82 Open 467 Closed
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Issues list

CosMx FOVs being skipped
#894 opened Oct 2, 2024 by jamesboot
@michalk8
1
Mapping of Xenium 5k data I/O 💿
#889 opened Sep 18, 2024 by shanggutianzhen
@timtreis
5
Edge correction in squidpy.gr.ripley? enhancement ✨ New feature or request graph 🕸️
#886 opened Sep 13, 2024 by zsfrbkv
@giovp
1
[doc improvment] inconsistent usage of img_key and img_res_key in code base doc Improvements or additions to documentation
#884 opened Sep 3, 2024 by TTTPOB
1
Add SpatialLeiden as clustering method enhancement ✨ New feature or request graph 🕸️
#879 opened Aug 26, 2024 by timtreis
@LLehner
Infer parameters in sq.gr.spatial_neighbors when only one choice enhancement ✨ New feature or request graph 🕸️ sdata compat 🌌
#876 opened Aug 21, 2024 by timtreis
@timtreis
1
Catch-all: XYZ doesn't work with SpatialData enhancement ✨ New feature or request sdata compat 🌌 squidpy2.0 Everything releated to a Squidpy 2.0 release
#875 opened Aug 20, 2024 by timtreis
@timtreis
4
Import from QuPath or CODEX Dataset question ❓ Further information is requested
#872 opened Aug 12, 2024 by andreevg04
@giovp
1
Ligand-receptor plot always report Error bug 🐛 Something isn't working
#871 opened Aug 9, 2024 by ruoyeruolan
@michalk8
6
sq.gr.ripley() cost too much memory enhancement ✨ New feature or request graph 🕸️ speed up 🏃
#870 opened Aug 9, 2024 by wangjiawen2013
@michalk8
1
No matching definition for argument type
#867 opened Aug 8, 2024 by wangjiawen2013
@michalk8
3
Working on 3D segmentation matrix image 🔬 question ❓ Further information is requested
#861 opened Jul 29, 2024 by rsemeraro
@giovp
2
Invalid RGBA argument when use sq.pl.co_occurrence plot 🌺 related to plotting
#855 opened Jul 23, 2024 by Donbbit
@giovp
1
Image analysis functionality enhancement ✨ New feature or request image 🔬 squidpy2.0 Everything releated to a Squidpy 2.0 release
#850 opened Jul 10, 2024 by timtreis
squidpy.im.ImageContainer cannot process some pyramid tiff (with z > 1) image 🔬 sdata compat 🌌
#848 opened Jul 8, 2024 by gdurif
@michalk8
2
obsm (spatial, spatial_fov) size seems unreasonably large. question ❓ Further information is requested
#846 opened Jun 26, 2024 by JonatanSahar
@michalk8
1
UnidentifiedImageError when reading in Nanostring CosMx Data I/O 💿
#845 opened Jun 26, 2024 by keiven-kun
@giovp
2
Documentation of spatial_scatter doc Improvements or additions to documentation maint 🏗️
#844 opened Jun 21, 2024 by psl-schaefer
1
After removing rows with only NaN interactions, none remain. graph 🕸️
#840 opened Jun 12, 2024 by asmlgkj
@michalk8
6
var_by_distance using polygons annotations enhancement ✨ New feature or request graph 🕸️
#837 opened Jun 11, 2024 by giovp
@LLehner
Vizgen-MERFISH multiple dataset integration/comparison good first issue Good for newcomers question ❓ Further information is requested
#835 opened Jun 7, 2024 by HSvitina
@giovp
neigh_correct when computing spatial graph graph 🕸️
#834 opened Jun 4, 2024 by wangjiawen2013
@giovp
1
calculate_image_features() error with tutorial data image 🔬
#826 opened May 14, 2024 by kimsjune
@timtreis
3
Stacking XYZ dimension images of mouse brain into 3D Volume 3d 🧊 image 🔬
#825 opened May 8, 2024 by sleepingcat4
@giovp
sort_order for pl.spatial_scatter plot 🌺 related to plotting
#824 opened May 4, 2024 by JBreunig
1
ProTip! What’s not been updated in a month: updated:<2025-02-26.