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MrVI does not store temporary distance matrices efficiently #3166

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PierreBoyeau opened this issue Jan 27, 2025 · 0 comments
Open

MrVI does not store temporary distance matrices efficiently #3166

PierreBoyeau opened this issue Jan 27, 2025 · 0 comments
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@PierreBoyeau
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MrVI temporarilly represents outputs as xarrays, typed not as numpy arrays, but as Jax arrays. This causes significant memory overhead, especially when computing cell-specific distance matrices for a large number of samples.
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@PierreBoyeau