[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -7,7 +7,7 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.3.5
+    rev: v0.3.7
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]

docs/how-to/ChIP_seq_genomic_ranges_tutorial.ipynb

@@ -623,7 +623,7 @@
    "source": [
     "## Mapping chromosome annotation styles\n",
     "\n",
-    "In order to annotate the ranges in the dataframe with gene symbols, ensembl ids, strand direction, etc. the two dataframes need to be merged. To make this seemless we use the bioframe [assembly_info](https://bioframe.readthedocs.io/en/latest/api-resources.html#bioframe.io.assembly.assembly_info) to map the numeric Ensembl chromosome annotation with the \"chr\" notation of the CHIP-Seq dataset and remove any peaks with unmapped chromosome values. This step is optional but makes joining the two dataframes much simpler in the next step."
+    "In order to annotate the ranges in the dataframe with gene symbols, ensembl ids, strand direction, etc. the two dataframes need to be merged. To make this seamless we use the bioframe [assembly_info](https://bioframe.readthedocs.io/en/latest/api-resources.html#bioframe.io.assembly.assembly_info) to map the numeric Ensembl chromosome annotation with the \"chr\" notation of the CHIP-Seq dataset and remove any peaks with unmapped chromosome values. This step is optional but makes joining the two dataframes much simpler in the next step."
    ]
   },
   {

pyproject.toml

@@ -146,4 +146,5 @@ skip = [
 ]
 
 [tool.codespell]
+skip = ".git,*.pdf,*.svg,*.ipynb"
 ignore-words-list = "theis,coo,homogenous"