Roodmus plugin for Scipion

Plugin to run Roodmus software in Scipion.

All the information regarding the software is avalaible in the following paper.

Roodmus is a benchmarking tool that allows for the analysis of cryo-EM reconstruction methods using ground truth data. Roodmus uses a molecular dynamics (MD) trajectory as input and samples this trajectory to generate a data set with encoded heterogeneity as defined by the MD. Synthetic micrographs are generated in the package using the Parakeet simulation software.

Plugin installation

There are two different ways to install Roodmus plugin:

Production mode

scipion3 installp -p scipion-em-roodmus

Development mode

git clone https://github.com/scipion-em/scipion-em-roodmus.git
scipion3 installp -p scipion-em-roodmus --devel