Scipion Data Manager

This project is a Scipion plugin to make depositions or retrieve data to/from several data portals:

• CryoEM Workflow Viewer: http://nolan.cnb.csic.es/cryoemworkflowviewer
• Onedata (using the https://cryo-em-docs.readthedocs.io/en/latest/user/download_all.html script developed by Masaryk University)

Setup

You will need to use Scipion3 to run these protocols.

1. Install the plugin:

• Install the stable version (Not available yet)

  Through the plugin manager GUI by launching Scipion and following Configuration >> Plugins or

scipion installp -p scipion-em-datamanager

• Developer's version

  1. Download repository:

  git clone https://github.com/scipion-em/scipion-em-datamanager.git
  

  2. Install:

  scipion3 installp -p path_to_scipion-em-datamanager --devel
  

2. Extra steps:

• If you want to make depositions to http://nolan.cnb.csic.es/cryoemworkflowviewer, you must register there first and obtain an API token.