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pyproject.toml
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[build-system]
requires = ["setuptools>=61.2"]
build-backend = "setuptools.build_meta"
[project]
name = "mri2mesh"
version = "0.1.0"
dependencies = ["pyvista", "numpy", "matplotlib", "nibabel", "scikit-image", "scipy", ]
classifiers = [
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
]
description = "Tool for converting labeled MRI data to a mesh"
authors = [
{name = "Marius Causemann", email = "mariusca@simula.no"},
{name = "Henrik Finsberg", email = "henriknf@simula.no"},
]
keywords = ["mri", "fem", "brain", "fluid", "mechanics", "meshing"]
urls = {Homepage = "https://github.com/kent-and/mri2mesh"}
[project.readme]
file = "README.md"
content-type = "text/markdown"
[project.scripts]
mri2mesh = "mri2mesh.cli:main"
[project.optional-dependencies]
test = ["pytest", "pytest-cov"]
docs = ["pyvista[jupyter]", "jupyter-book"]
[tool.setuptools]
include-package-data = true
package-dir = {"" = "src"}
zip-safe = false
[tool.setuptools.packages.find]
where = ["src"]
namespaces = false
[tool.aliases]
test = "pytest"
[tool.pytest.ini_options]
testpaths = ["tests"]
[tool.mypy]
files = ["src/mri2mesh", "tests"]
ignore_missing_imports = true
exclude = [
"docs",
"examples",
]
[tool.coverage.run]
omit = ["src/mri2mesh/__main__.py"]
[tool.ruff]
# Exclude a variety of commonly ignored directories.
exclude = [
"examples",
".bzr",
".direnv",
".eggs",
".git",
".hg",
".mypy_cache",
".nox",
".pants.d",
".pytype",
".ruff_cache",
".svn",
".tox",
".venv",
"__pypackages__",
"_build",
"buck-out",
"build",
"dist",
"node_modules",
"venv",
]
# Same as Black.
line-length = 100
# Assume Python 3.10.
target-version = "py310"
[tool.ruff.lint]
# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
select = ["E", "F"]
ignore = ["E402", "E741", "E743", "E731"]
# Allow autofix for all enabled rules (when `--fix`) is provided.
fixable = ["A", "B", "C", "D", "E", "F"]
unfixable = []
# Allow unused variables when underscore-prefixed.
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
[tool.ruff.lint.mccabe]
# Unlike Flake8, default to a complexity level of 10.
max-complexity = 10
[tool.bumpversion]
allow_dirty = false
commit = true
message = "Bump version: {current_version} → {new_version}"
tag = true
sign_tags = false
tag_name = "v{new_version}"
tag_message = "Bump version: {current_version} → {new_version}"
current_version = "1.1.3"
[[tool.bumpversion.files]]
filename = "pyproject.toml"
search = 'version = "{current_version}"'
replace = 'version = "{new_version}"'