run_recon.m

%% CS-4Dflow-recon
% Run script (F5) to start reconstructions

% Editors (alphabetical order):
% l.m.gottwald@amc.uva.nl
% e.s.peper@amc.uva.nl
% v.q.pronk
% r.merton@amsterdamumc.nl
% e.m.schrauben@amsterdamumc.nl

%% housekeeping / initialization
restoredefaultpath;
addpath(fullfile(cd,'./lib/'));
clear;
close all;
clc;

%% run recons
global logger
PROFILES = getprofiles();
for ii = 1:length(PROFILES)
    TIME = datestr(datetime('now'),30);
    logger = Logger();
    try
        pfile = PROFILES{ii};
        profile = load_profile(pfile);
        logger.start(profile.name,TIME);
        recon(profile);
        move_pro(pfile, profile, 'archive');
    catch ME
        logger.note(sprintf('WARNING: Error occured in reconstruction! Recon might be incomplete or incorrect!\n%s',ME.message'));
    end
    logger.finish();
    try
      %  sendmail_from_amc_textfile('INSERT_EMAIL_ADDRESS_HERE',sprintf('Finished recon: %s',pfile),fullfile(cd,'logs',[logger.savename,'.log']);
    catch ME
        logger.note(sprintf('WARNING: Error occured in sendmail. Log is not sent.\n%s',ME.message'));
    end
end