Files

cons_test

Name		Name	Last commit message	Last commit date
parent directory ..
ctl		ctl
results		results
tree		tree
Makefile		Makefile
README.md		README.md
aa_funcs.R		aa_funcs.R
codon_funcs.R		codon_funcs.R
common.R		common.R
constest_aa.R		constest_aa.R
constest_codon.R		constest_codon.R
constest_nucleotide.R		constest_nucleotide.R
nucleotide_funcs.R		nucleotide_funcs.R
update_plots.R		update_plots.R
update_ttabs.R		update_ttabs.R
utils.R		utils.R

README.md

Dependencies

R with the phylosim package installed.
The seqret utility from the EMBOSS package installed in the path.
The baseml and codeml programs installed in the path.

Issue make nuc, make aa and make codon to run the simulations.