Minor updates.

samtools · Feb 11, 2025 · d89abba · d89abba
1 parent 4877f9e
commit d89abba
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Showing 3 changed files with 1 addition and 3 deletions.
diff --git a/src/main/java/htsjdk/samtools/cram/compression/fqzcomp/FQZCompExternalCompressor.java b/src/main/java/htsjdk/samtools/cram/compression/fqzcomp/FQZCompExternalCompressor.java
@@ -7,7 +7,7 @@
 
 public class FQZCompExternalCompressor extends ExternalCompressor {
 
-    // TODO: this codec is not yet full implemented; it is decode only
+    // this codec is decode only; not implemented for writing
     private final FQZCompDecode fqzCompDecoder;
 
     public FQZCompExternalCompressor(

diff --git a/...va/htsjdk/samtools/cram/compression/nametokenisation/NameTokeniserExternalCompressor.java b/...va/htsjdk/samtools/cram/compression/nametokenisation/NameTokeniserExternalCompressor.java
@@ -22,7 +22,6 @@ public NameTokeniserExternalCompressor(
 
     @Override
     public byte[] compress(byte[] data) {
-        //TODO: this method needs a useArith flag; for now use false
 
         // Arith coding is typically 1-5% smaller, but around 50-100% slower
         final ByteBuffer buffer = nameTokEncoder.compress(

diff --git a/src/main/java/htsjdk/samtools/cram/structure/SliceBlocksReadStreams.java b/src/main/java/htsjdk/samtools/cram/structure/SliceBlocksReadStreams.java
@@ -28,7 +28,6 @@
 import htsjdk.samtools.cram.io.BitInputStream;
 import htsjdk.samtools.cram.io.DefaultBitInputStream;
 import htsjdk.samtools.cram.structure.block.Block;
-import htsjdk.samtools.cram.structure.block.BlockCompressionMethod;
 import htsjdk.utils.ValidationUtils;
 
 import java.io.ByteArrayInputStream;