diff --git a/.gitignore b/.gitignore
index 2d0f03c..d5d5f20 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,6 +1,11 @@
.DS_Store
+
+google-credentials.json
+google-credentials-shared.json
+
+
data/*/*.csv
data/*/*.csv.gz
diff --git a/app/classification/README.md b/app/classification/README.md
index 35f6e56..8380fb8 100644
--- a/app/classification/README.md
+++ b/app/classification/README.md
@@ -25,6 +25,7 @@ python -m app.classification.decision_tree
```sh
python -m app.classification.random_forest
+FIG_SHOW=false FIG_SAVE=false python -m app.classification.random_forest
```
@@ -33,4 +34,6 @@ python -m app.classification.random_forest
```sh
python -m app.classification.xgboost
+
+FIG_SHOW=false FIG_SAVE=false python -m app.classification.xgboost
```
diff --git a/app/classification/logistic_regression.py b/app/classification/logistic_regression.py
index 7287a5d..cac0f41 100644
--- a/app/classification/logistic_regression.py
+++ b/app/classification/logistic_regression.py
@@ -1,9 +1,13 @@
+import os
# https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html
from sklearn.linear_model import LogisticRegression
+from pandas import Series
+from app.classification import save_results_json
from app.classification.pipeline import ClassificationPipeline
+
class LogisticRegressionPipeline(ClassificationPipeline):
def __init__(self, ds=None, y_col="is_bot", param_grid=None, results_dirpath=None):
@@ -34,6 +38,22 @@ def __init__(self, ds=None, y_col="is_bot", param_grid=None, results_dirpath=Non
}
+ @property
+ def explainability_json(self):
+ return {
+ "intercept": self.intercept.round(4),
+ # "coefs": self.coefs.round(4).tolist(),
+ "coefs": self.coefs.round(4).to_dict(), # includes feature names!!
+ }
+
+ @property
+ def coefs(self):
+ return Series(self.model.coef_[0], index=self.model.feature_names_in_) #.sort_values(ascending=False) # don't sort? preserve order with features?
+
+ @property
+ def intercept(self):
+ return self.model.intercept_[0]
+
if __name__ == "__main__":
diff --git a/app/classification/pipeline.py b/app/classification/pipeline.py
index 500ed51..96fb0f7 100644
--- a/app/classification/pipeline.py
+++ b/app/classification/pipeline.py
@@ -85,6 +85,7 @@ def model_type(self):
def perform(self):
self.train_eval()
self.save_results()
+ self.save_coefs()
self.save_predictions()
self.plot_confusion_matrix()
@@ -93,6 +94,8 @@ def perform(self):
else:
self.plot_roc_curve()
+ #self.save_and_upload_model()
+
def train_eval(self):
@@ -124,18 +127,12 @@ def train_eval(self):
print("-----------------")
print("BEST PARAMS:", self.gs.best_params_)
print("BEST SCORE:", self.gs.best_score_)
- clf = self.gs.best_estimator_.named_steps["classifier"]
-
- self.class_names = self.class_names or list(clf.classes_)
- self.class_labels = self.class_labels or class_labels(y_col=self.y_col, class_names=self.class_names)
- # for logistic and xgboost:
- #print("COEFS:")
- #coefs = Series(model.coef_[0], index=features).sort_values(ascending=False)
+ # overwriting / updating self.model here, because this has the learned coefs, whereas the old self.model does not!
+ self.model = self.gs.best_estimator_.named_steps["classifier"]
- # for xgboost:
- # model.feature_importances_
- # Series(model.feature_importances_, index=feature_names).sort_values(ascending=False)
+ self.class_names = self.class_names or list(self.model.classes_)
+ self.class_labels = self.class_labels or class_labels(y_col=self.y_col, class_names=self.class_names)
print("-----------------")
print("EVALUATION...")
@@ -157,11 +154,17 @@ def train_eval(self):
"param_grid": self.param_grid,
"best_params": self.gs.best_params_,
"best_score": self.gs.best_score_
- }
+ },
+ "model_params": self.model.get_params() # all params used by the model!
}
self.results_json = {**self.results.as_json, **self.results_json} # merge dicts
pprint(self.results_json)
+ @property
+ def explainability_json(self) -> dict:
+ """implement this in child class"""
+ raise NotImplementedError("Please implement in child class. Return a serializable dictionary for JSON conversion.")
+
@cached_property
def predictions_df(self) -> DataFrame:
@@ -178,6 +181,7 @@ def predictions_df(self) -> DataFrame:
df = text_and_labels.merge(df, how="right", left_index=True, right_index=True)
return df
+
def save_results(self):
json_filepath = os.path.join(self.results_dirpath, "results.json")
save_results_json(self.results_json, json_filepath)
@@ -190,6 +194,11 @@ def save_predictions(self): # confusion_only=False
# csv_filepath = os.path.join(self.results_dirpath, "confusions.csv")
df.to_csv(csv_filepath, index=False)
+ def save_coefs(self):
+ json_filepath = os.path.join(self.results_dirpath, "explainability.json")
+ save_results_json(self.explainability_json, json_filepath)
+
+
@cached_property
def results_dirpath(self):
dirpath = self._results_dirpath or os.path.join(CLASSIFICATION_RESULTS_DIRPATH, self.y_col, self.model_dirname)
@@ -220,8 +229,6 @@ def plot_confusion_matrix(self, fig_show=FIG_SHOW, fig_save=FIG_SAVE, showscale=
fig.write_html(os.path.join(self.results_dirpath, "confusion.html"))
-
-
def plot_roc_curve(self, fig_show=FIG_SHOW, fig_save=FIG_SAVE, height=500):
"""Plots the ROC characteristic and the AUC Score
diff --git a/app/classification/random_forest.py b/app/classification/random_forest.py
index 320e8fd..f685d78 100644
--- a/app/classification/random_forest.py
+++ b/app/classification/random_forest.py
@@ -1,5 +1,6 @@
# https://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestClassifier.html
from sklearn.ensemble import RandomForestClassifier
+from pandas import Series
from app.classification.pipeline import ClassificationPipeline
@@ -53,6 +54,21 @@ def __init__(self, ds=None, y_col="is_bot", param_grid=None, results_dirpath=Non
}
+ @property
+ def explainability_json(self):
+ return {
+ "coefs": self.coefs.round(4).to_dict(), # includes feature names!!
+ }
+
+ @property
+ def coefs(self):
+ """random forest has .feature_importances_ instead of .coef_ """
+ return Series(self.model.feature_importances_, index=self.model.feature_names_in_) #.sort_values(ascending=False) # don't sort? preserve order with features?
+
+
+
+
+
if __name__ == "__main__":
from app.classification import Y_COLS, Y_COLS_BINARY, Y_COLS_MULTICLASS
diff --git a/app/classification/xgboost.py b/app/classification/xgboost.py
index ceb7970..aecc5eb 100644
--- a/app/classification/xgboost.py
+++ b/app/classification/xgboost.py
@@ -14,6 +14,7 @@
# https://xgboost.readthedocs.io/en/latest/python/python_api.html#xgboost.XGBClassifier
from xgboost import XGBClassifier
+from pandas import Series
from app.classification.pipeline import ClassificationPipeline
@@ -124,6 +125,17 @@ def __init__(self, ds=None, y_col="is_bot", param_grid=None, results_dirpath=Non
}
+ @property
+ def explainability_json(self):
+ return {
+ "coefs": self.coefs.round(4).to_dict(), # includes feature names!!
+ }
+
+ @property
+ def coefs(self):
+ """random forest has .feature_importances_ instead of .coef_ """
+ return Series(self.model.feature_importances_, index=self.model.feature_names_in_) #.sort_values(ascending=False) # don't sort? preserve order with features?
+
diff --git a/results/classification/allway_label/logistic_regression/explainability.json b/results/classification/allway_label/logistic_regression/explainability.json
new file mode 100644
index 0000000..8ad1e76
--- /dev/null
+++ b/results/classification/allway_label/logistic_regression/explainability.json
@@ -0,0 +1,1541 @@
+{
+ "intercept": 0.6495,
+ "coefs": {
+ "0": 0.0979,
+ "1": 0.3027,
+ "2": -0.236,
+ "3": -0.2019,
+ "4": 0.946,
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new file mode 100644
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--- /dev/null
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diff --git a/results/classification/fourway_label/random_forest/explainability.json b/results/classification/fourway_label/random_forest/explainability.json
new file mode 100644
index 0000000..b3bbfda
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\ No newline at end of file
diff --git a/results/classification/fourway_label/random_forest/results.json b/results/classification/fourway_label/random_forest/results.json
index 5f29c4a..1914937 100644
--- a/results/classification/fourway_label/random_forest/results.json
+++ b/results/classification/fourway_label/random_forest/results.json
@@ -13,100 +13,115 @@
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diff --git a/results/classification/fourway_label/xgboost/explainability.json b/results/classification/fourway_label/xgboost/explainability.json
new file mode 100644
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diff --git a/results/classification/index.html b/results/classification/index.html
index 61fe0a9..a8f19e4 100644
--- a/results/classification/index.html
+++ b/results/classification/index.html
@@ -169,12 +169,14 @@ Fourway (Bot x Opinion)
this.results_filepath = `./${this.y_col}/${this.model_dirname}/results.json`
//this.results = this.loadJSONData(this.results_filepath)
//this.results = this.state.results
+ this.coefs_filepath = `./${this.y_col}/${this.model_dirname}/explainability.json`
return (
{this.props.model_name}
-
Results JSON
+
Results JSON |
+
Explainability JSON
diff --git a/results/classification/is_bom_astroturf/logistic_regression/explainability.json b/results/classification/is_bom_astroturf/logistic_regression/explainability.json
new file mode 100644
index 0000000..cda726c
--- /dev/null
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diff --git a/results/classification/is_bom_astroturf/random_forest/explainability.json b/results/classification/is_bom_astroturf/random_forest/explainability.json
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index 0000000..c6eeff7
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diff --git a/results/classification/is_bom_astroturf/random_forest/results.json b/results/classification/is_bom_astroturf/random_forest/results.json
index 4258c11..4bebd33 100644
--- a/results/classification/is_bom_astroturf/random_forest/results.json
+++ b/results/classification/is_bom_astroturf/random_forest/results.json
@@ -9,72 +9,87 @@
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\ No newline at end of file
diff --git a/results/classification/is_bom_astroturf/xgboost/explainability.json b/results/classification/is_bom_astroturf/xgboost/explainability.json
new file mode 100644
index 0000000..469b410
--- /dev/null
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diff --git a/results/classification/is_bom_overall/logistic_regression/explainability.json b/results/classification/is_bom_overall/logistic_regression/explainability.json
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index 0000000..713f601
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diff --git a/results/classification/is_bom_overall/random_forest/results.json b/results/classification/is_bom_overall/random_forest/results.json
index 9dec073..3e9f6f8 100644
--- a/results/classification/is_bom_overall/random_forest/results.json
+++ b/results/classification/is_bom_overall/random_forest/results.json
@@ -44,37 +44,52 @@
0
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- 100,
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- 250
- ],
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- "gini",
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+ "gini"
],
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+ 3,
5,
- 10,
- 25,
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+ 8
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+ "classifier__n_estimators": [
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+ 1000
]
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+ "classifier__min_samples_leaf": 8,
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},
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+ "best_score": 0.7292263597204633
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+ "n_jobs": null,
+ "oob_score": false,
+ "random_state": 99,
+ "verbose": 0,
+ "warm_start": false
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}
\ No newline at end of file
diff --git a/results/classification/is_bom_overall/xgboost/explainability.json b/results/classification/is_bom_overall/xgboost/explainability.json
new file mode 100644
index 0000000..2890672
--- /dev/null
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diff --git a/results/classification/is_bot/logistic_regression/explainability.json b/results/classification/is_bot/logistic_regression/explainability.json
new file mode 100644
index 0000000..d01dba3
--- /dev/null
+++ b/results/classification/is_bot/logistic_regression/explainability.json
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+}
\ No newline at end of file
diff --git a/results/classification/is_bot/random_forest/results.json b/results/classification/is_bot/random_forest/results.json
index 0087548..905051f 100644
--- a/results/classification/is_bot/random_forest/results.json
+++ b/results/classification/is_bot/random_forest/results.json
@@ -51,23 +51,18 @@
"model_type": "RandomForestClassifier",
"k_folds": 5,
"param_grid": {
- "classifier__n_estimators": [
- 50,
- 100,
- 150,
- 250
- ],
"classifier__criterion": [
- "gini",
- "log_loss"
+ "gini"
],
"classifier__min_samples_leaf": [
- 1,
+ 3,
5,
- 10,
- 25,
- 50,
- 100
+ 8
+ ],
+ "classifier__n_estimators": [
+ 250,
+ 500,
+ 1000
]
},
"best_params": {
@@ -76,5 +71,25 @@
"classifier__n_estimators": 250
},
"best_score": 0.9772588827285714
+ },
+ "model_params": {
+ "bootstrap": true,
+ "ccp_alpha": 0.0,
+ "class_weight": null,
+ "criterion": "gini",
+ "max_depth": null,
+ "max_features": "sqrt",
+ "max_leaf_nodes": null,
+ "max_samples": null,
+ "min_impurity_decrease": 0.0,
+ "min_samples_leaf": 5,
+ "min_samples_split": 2,
+ "min_weight_fraction_leaf": 0.0,
+ "n_estimators": 250,
+ "n_jobs": null,
+ "oob_score": false,
+ "random_state": 99,
+ "verbose": 0,
+ "warm_start": false
}
}
\ No newline at end of file
diff --git a/results/classification/is_bot/xgboost/explainability.json b/results/classification/is_bot/xgboost/explainability.json
new file mode 100644
index 0000000..8638f1b
--- /dev/null
+++ b/results/classification/is_bot/xgboost/explainability.json
@@ -0,0 +1,1540 @@
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diff --git a/results/classification/is_factual/logistic_regression/explainability.json b/results/classification/is_factual/logistic_regression/explainability.json
new file mode 100644
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\ No newline at end of file
diff --git a/results/classification/is_factual/random_forest/results.json b/results/classification/is_factual/random_forest/results.json
index 581c358..59db77a 100644
--- a/results/classification/is_factual/random_forest/results.json
+++ b/results/classification/is_factual/random_forest/results.json
@@ -9,72 +9,87 @@
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[
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[
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]
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- 250
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"classifier__criterion": [
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+ "gini"
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}
\ No newline at end of file
diff --git a/results/classification/is_factual/xgboost/explainability.json b/results/classification/is_factual/xgboost/explainability.json
new file mode 100644
index 0000000..53af15a
--- /dev/null
+++ b/results/classification/is_factual/xgboost/explainability.json
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diff --git a/results/classification/is_toxic/logistic_regression/results.json b/results/classification/is_toxic/logistic_regression/results.json
index 14ce0a4..cf782bc 100644
--- a/results/classification/is_toxic/logistic_regression/results.json
+++ b/results/classification/is_toxic/logistic_regression/results.json
@@ -4,11 +4,11 @@
"1"
],
"class_labels": [
- "Normal",
+ "Non-toxic",
"Toxic"
],
"classification_report": {
- "Normal": {
+ "Non-toxic": {
"precision": 0.8915929203539823,
"recall": 0.9861337683523654,
"f1-score": 0.9364833462432224,
diff --git a/results/classification/is_toxic/random_forest/explainability.json b/results/classification/is_toxic/random_forest/explainability.json
new file mode 100644
index 0000000..427cfa6
--- /dev/null
+++ b/results/classification/is_toxic/random_forest/explainability.json
@@ -0,0 +1,1540 @@
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\ No newline at end of file
diff --git a/results/classification/is_toxic/random_forest/results.json b/results/classification/is_toxic/random_forest/results.json
index da4b84f..10548ae 100644
--- a/results/classification/is_toxic/random_forest/results.json
+++ b/results/classification/is_toxic/random_forest/results.json
@@ -9,72 +9,87 @@
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[
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]
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- 100,
- 150,
- 250
- ],
"classifier__criterion": [
- "gini",
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+ "gini"
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]
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}
\ No newline at end of file
diff --git a/results/classification/is_toxic/xgboost/explainability.json b/results/classification/is_toxic/xgboost/explainability.json
new file mode 100644
index 0000000..27d0f91
--- /dev/null
+++ b/results/classification/is_toxic/xgboost/explainability.json
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diff --git a/results/classification/opinion_community/logistic_regression/explainability.json b/results/classification/opinion_community/logistic_regression/explainability.json
new file mode 100644
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+}
\ No newline at end of file
diff --git a/results/classification/opinion_community/random_forest/results.json b/results/classification/opinion_community/random_forest/results.json
index 7864cde..a1a0253 100644
--- a/results/classification/opinion_community/random_forest/results.json
+++ b/results/classification/opinion_community/random_forest/results.json
@@ -9,28 +9,28 @@
],
"classification_report": {
"Anti-Trump": {
- "precision": 0.8664921465968587,
+ "precision": 0.8604852686308492,
"recall": 0.9880597014925373,
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+ "f1-score": 0.9198703103288559,
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},
"Pro-Trump": {
- "precision": 0.967391304347826,
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+ "precision": 0.9666666666666667,
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+ "f1-score": 0.8009205983889528,
"support": 509.0
},
- "accuracy": 0.8910171730515192,
+ "accuracy": 0.8857331571994715,
"macro avg": {
- "precision": 0.9169417254723424,
- "recall": 0.8437351552649327,
- "f1-score": 0.8675750506115529,
+ "precision": 0.9135759676487579,
+ "recall": 0.8358766090959739,
+ "f1-score": 0.8603954543589043,
"support": 1514.0
},
"weighted avg": {
- "precision": 0.9004139902528971,
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- "f1-score": 0.8858282574093918,
+ "precision": 0.8961829777459291,
+ "recall": 0.8857331571994715,
+ "f1-score": 0.8798799514269995,
"support": 1514.0
}
},
@@ -40,41 +40,56 @@
12
],
[
- 153,
- 356
+ 161,
+ 348
]
],
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+ "roc_auc_score": 0.9642924864870148,
"y_col": "opinion_community",
"x_scaled": false,
"grid_search": {
"model_type": "RandomForestClassifier",
"k_folds": 5,
"param_grid": {
- "classifier__n_estimators": [
- 50,
- 100,
- 150,
- 250
- ],
"classifier__criterion": [
- "gini",
- "log_loss"
+ "gini"
],
"classifier__min_samples_leaf": [
- 1,
+ 3,
5,
- 10,
- 25,
- 50,
- 100
+ 8
+ ],
+ "classifier__n_estimators": [
+ 250,
+ 500,
+ 1000
]
},
"best_params": {
"classifier__criterion": "gini",
- "classifier__min_samples_leaf": 1,
- "classifier__n_estimators": 250
+ "classifier__min_samples_leaf": 3,
+ "classifier__n_estimators": 1000
},
- "best_score": 0.9574166908138636
+ "best_score": 0.9575828222724795
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+ "model_params": {
+ "bootstrap": true,
+ "ccp_alpha": 0.0,
+ "class_weight": null,
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+ "n_estimators": 1000,
+ "n_jobs": null,
+ "oob_score": false,
+ "random_state": 99,
+ "verbose": 0,
+ "warm_start": false
}
}
\ No newline at end of file
diff --git a/results/classification/opinion_community/xgboost/explainability.json b/results/classification/opinion_community/xgboost/explainability.json
new file mode 100644
index 0000000..8638dc4
--- /dev/null
+++ b/results/classification/opinion_community/xgboost/explainability.json
@@ -0,0 +1,1540 @@
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+}
\ No newline at end of file
diff --git a/test/classification/results_test.py b/test/classification/results_test.py
index fa1d6db..746324a 100644
--- a/test/classification/results_test.py
+++ b/test/classification/results_test.py
@@ -1,4 +1,6 @@
+from pandas import Series
+
from app.classification.logistic_regression import LogisticRegressionPipeline
from app.classification.random_forest import RandomForestPipeline
from app.classification.xgboost import XGBoostPipeline
@@ -20,9 +22,15 @@ def results_ok(pipeline):
results_json = pipeline.results_json
assert sorted(results_json.keys()) == [
- 'class_labels', 'class_names',
- 'classification_report', 'confusion_matrix', 'grid_search',
- 'roc_auc_score', 'x_scaled', 'y_col'
+ 'class_labels',
+ 'class_names',
+ 'classification_report',
+ 'confusion_matrix',
+ 'grid_search',
+ 'model_params',
+ 'roc_auc_score',
+ 'x_scaled',
+ 'y_col'
]
assert isinstance(results_json["roc_auc_score"], float)
assert sorted(results_json["grid_search"].keys()) == [
@@ -51,6 +59,25 @@ def plots_ok(pipeline):
pipeline.plot_roc_curve(fig_save=False, fig_show=False)
+def logistic_explainable(pipeline):
+ assert isinstance(pipeline.coefs, Series)
+ assert isinstance(pipeline.intercept, float)
+ assert isinstance(pipeline.explainability_json, dict)
+ assert list(pipeline.explainability_json.keys()) == ["intercept", "coefs"]
+
+def forest_explainable(pipeline):
+ assert isinstance(pipeline.coefs, Series)
+ assert isinstance(pipeline.explainability_json, dict)
+ assert list(pipeline.explainability_json.keys()) == ["coefs"]
+
+def boost_explainable(pipeline):
+ assert isinstance(pipeline.coefs, Series)
+ assert isinstance(pipeline.explainability_json, dict)
+ assert list(pipeline.explainability_json.keys()) == ["coefs"]
+
+
+
+
def test_logistic_regression_binary(ds):
pipeline = LogisticRegressionPipeline(ds=ds, y_col="is_bot", param_grid=logistic_params_grid)
@@ -58,6 +85,7 @@ def test_logistic_regression_binary(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
+ logistic_explainable(pipeline)
def test_random_forest_binary(ds):
@@ -66,6 +94,8 @@ def test_random_forest_binary(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
+ forest_explainable(pipeline)
+
def test_xgboost_binary(ds):
pipeline = XGBoostPipeline(ds=ds, y_col="is_bot", param_grid={})
@@ -73,7 +103,7 @@ def test_xgboost_binary(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
-
+ boost_explainable(pipeline)
@@ -83,7 +113,7 @@ def test_logistic_regression_multiclass(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
-
+ logistic_explainable(pipeline)
def test_random_forest_multiclass(ds):
pipeline = RandomForestPipeline(ds=ds, y_col="fourway_label", param_grid=forest_params_grid)
@@ -91,6 +121,7 @@ def test_random_forest_multiclass(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
+ forest_explainable(pipeline)
def test_xgboost_multiclass(ds):
pipeline = XGBoostPipeline(ds=ds, y_col="fourway_label", param_grid={})
@@ -98,3 +129,4 @@ def test_xgboost_multiclass(ds):
pipeline.train_eval()
results_ok(pipeline)
plots_ok(pipeline)
+ boost_explainable(pipeline)