Skip to content

v4.3.0
Compare
Choose a tag to compare
@xieshu95 xieshu95 released this 27 Jan 10:38
· 188 commits to master since this release
v4.3.0
d0ed3df
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

v4.3.0

  • Due to recent changes in CRAN policy that result in warnings due to the use of Rcpp related packages that link to libraries that use sprintf ('Rcpp' and 'BH'), 'DAISIE' now requires Rcpp v(>= 1.0.10) and BH v(>= 1.81.0-1). See RcppCore/Rcpp#1236 and eddelbuettel/bh#90 respectively. Also require package 'DDD' v(>= 5.0.0).
  • Add code for the trait-dependent simulations considering different carrying capacities for each trait state.
  • Improvements to the relaxed rate model fitting procedure.
  • Add DAISIE_count_species() to count the number of species in a datalist or simulated data.
  • Simply printing code by wrapping multiple instances into print_parameters_and_loglik().
  • Overall documentation improvements and updated references.
  • Bug fix in DAISIE_sim_cr_iw(), which wrongly computed number of species at present. #147
  • Improve the likelihood calculation. Fixed incorrect likelihood present for type 2 case CS model inference if the values of lambda were high, in the C++ implementation.
  • Overhaul GHA workflows to be more up to date and more conservative when to run. Feature branches require the tag [run ci] be added to the commit message to run.
Assets 2
Loading