From f6bde00cd72e42bd9802cec6c9d2735e7cf31cda Mon Sep 17 00:00:00 2001
From: rsetienne <rampaletienne@gmail.om>
Date: Thu, 24 Oct 2024 12:10:55 +0200
Subject: [PATCH] Update the documentation about the exact and approximate
 likelihood function

---
 R/default_params_doc.R | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/R/default_params_doc.R b/R/default_params_doc.R
index 2ebaafe5..666d9502 100644
--- a/R/default_params_doc.R
+++ b/R/default_params_doc.R
@@ -420,6 +420,10 @@
 #'   incorrect output due to parameter transformation.
 #' @param num_cycles The number of cycles the optimizer will go through.
 #'   Default is 1.
+#' @param function_to_optimize Here one can indicate to use a function
+#'   ('DAISIE_approx') that approximates the DAISIE likelihood or the default
+#'   value 'DAISIE_exact'). The approximate likelihood can for example be used
+#'   in case the exact one fails.
 #' @param trait_pars A named list containing diversification rates considering
 #'   two trait states created by \code{\link{create_trait_pars}}:
 #' \itemize{