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Update the documentation about the exact and approximate likelihood f…
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rsetienne committed Oct 24, 2024
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#' incorrect output due to parameter transformation.
#' @param num_cycles The number of cycles the optimizer will go through.
#' Default is 1.
#' @param function_to_optimize Here one can indicate to use a function
#' ('DAISIE_approx') that approximates the DAISIE likelihood or the default
#' value 'DAISIE_exact'). The approximate likelihood can for example be used
#' in case the exact one fails.
#' @param trait_pars A named list containing diversification rates considering
#' two trait states created by \code{\link{create_trait_pars}}:
#' \itemize{
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