DESCRIPTION

Package: DAISIE
Type: Package
Title: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Version: 4.4.1
Date: 2023-10-20
Depends: R (>= 4.2.0)
biocViews:
Imports: 
    deSolve,
    graphics,
    stats,
    utils,
    DDD (>= 5.0),
    subplex,
    Matrix,
    tensor,
    pracma,
    testit,
    foreach,
    doParallel,
    magrittr,
    parallel,
    Rcpp (>= 1.0.10)
LinkingTo: 
    Rcpp,
    RcppEigen,
    BH (>= 1.81.0-1)
Suggests: 
    covr,
    testthat (>= 2.1.0),
    knitr,
    rmarkdown,
    gridExtra,
    dplyr,
    ggplot2,
    ggtree (>= 3.0.0),
    tidytree,
    tidyr,
    purrr,
    ape,
    phytools,
    tibble
Enhances: doMC
Authors@R: c(
    person(given = "Rampal S.",
           family = "Etienne",
           email = "r.s.etienne@rug.nl",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-2142-7612")),
    person(given = "Luis",
           family = "Valente",
           email = "luis.valente@naturalis.nl",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-4247-8785")),
    person(given = "Albert B.",
           family = "Phillimore",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-6553-1553")),
    person(given = "Bart",
           family = "Haegeman",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-2325-4727")),
    person(given = "Joshua W.",
           family = "Lambert",
           role = c("aut"),
           email = "j.w.l.lambert@rug.nl",
           comment = c(ORCID = "0000-0001-5218-3046")),
    person(given = "Pedro",
           family = "Santos Neves",
           role = c("aut"),
           email = "p.m.santos.neves@rug.nl",
           comment = c(ORCID = "0000-0003-2561-4677")),
    person(given = "Shu",
           family = "Xie",
           role = c("aut"),
           email = "s.xie@rug.nl",
           comment = c(ORCID = "0000-0001-9594-946X")),
    person(given = "Richèl J.C.",
           family = "Bilderbeek",
           email = "richel@richelbilderbeek.nl",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-1107-7049")),
    person(given = "Hanno",
           family = "Hildenbrandt",
           email = "h.hildenbrandt@rug.nl",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-6784-1037")),
    person(given = "Torsten",
           family = "Hauffe",
           email = "torsten.hauffe@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0001-5711-9457")),
    person(given = "Giovanni",
           family = "Laudanno",
           email = "glaudanno@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-2952-3345")),
    person(given = "Nadiah",
           family = "Kristensen",
           email = "nadiah@nadiah.org",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-9720-4581")),
    person(given = "Raphael",
           family = "Scherrer",
           email = "r.scherrer@rug.nl",
           role = c("ctb"),
           comment = c(ORCID = "0000-0002-1447-7630")))
License: GPL (>= 3) | file LICENSE
Copyright: See the file COPYRIGHTS for various DAISIE copyright details
Description: Simulates and computes the (maximum) likelihood of a dynamical 
    model of island biota assembly through speciation, immigration and
    extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
NeedsCompilation: yes
SystemRequirements: C++17
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/rsetienne/DAISIE,
    https://rsetienne.github.io/DAISIE/
BugReports: https://github.com/rsetienne/DAISIE/issues
RoxygenNote: 7.2.3