Bad dataset analysis

Trycycler cluster

To begin, I ran Trycycler cluster on the assemblies:

trycycler cluster --reads reads.fastq.gz --assemblies assemblies/*.fasta --out_dir trycycler

Which produced this output.

A whopping 69 clusters were made, and the tree looks hideous:

Final thoughts

This dataset was a bit of a trick – it's unusable rubbish.