Updated pandas and yaml along with code where needed.
The following files are broken in a Windows context because of the : in the names. These files were renamed replacing : with -.
./mimic3models/length_of_stay/los_ts0.8.input_str:previous.start_time:zero.n5e4.normalizer
./mimic3models/length_of_stay/los_ts1.0.input_str:previous.start_time:zero.n5e4.normalizer
./mimic3models/in_hospital_mortality/ihm_ts0.8.input_str:previous.start_time:zero.normalizer
./mimic3models/in_hospital_mortality/ihm_ts1.0.input_str:previous.start_time:zero.normalizer
./mimic3models/in_hospital_mortality/ihm_ts2.0.input_str:previous.start_time:zero.normalizer
./mimic3models/multitask/mult_ts1.0.input_str:previous.start_time:zero.normalizer
./mimic3models/phenotyping/ph_ts0.8.input_str:previous.start_time:zero.normalizer
./mimic3models/phenotyping/ph_ts1.0.input_str:previous.start_time:zero.normalizer
./mimic3models/decompensation/decomp_ts0.8.input_str:previous.n1e5.start_time:zero.normalizer
./mimic3models/decompensation/decomp_ts1.0.input_str:previous.n1e5.start_time:zero.normalizer
The following commands were issued:
find . -type f -name "*:*" -exec rename 's/:/-/g' {} +
Searching for :.*normalizer all semicolons in the string were replaced.