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bashoxides
2 repositories
c-c
4 repositories
Cancer evolution
17 repositories
Chem-informatics
4 repositories
data/EDA
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docs
20 repositories
evo/land
6 repositories
evo/tree
14 repositories
Fast
46 repositories
Io
22 repositories
IO/config
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Io/data
10 repositories
io/sequence
23 repositories
Jupyter
34 repositories
llms
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Log
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multi-omics-vc
20 repositories
mutations
10 repositories
networks/predictions
30 repositories
pert/mono
9 repositories
pert/multi
7 repositories
pheno🖼️
7 repositories
Protein
18 repositories
sc
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sc/pert
1 repository
Stats
39 repositories
transcriptomics
17 repositories
transcriptomics/got
17 repositories
Viz
18 repositories
Viz/interactive
11 repositories
viz/network
14 repositories
viz/sequence
11 repositories
Starred repositories
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)
A curated list for awesome self-supervised learning for graphs.
PyGCL: A PyTorch Library for Graph Contrastive Learning
A Python 3 version of the protein descriptor package propy
A tool to get a uniprot sequence returned to terminal or from within Python.
Unbearably fast near-real-time hybrid runtime-static type-checking in pure Python.
STREAMLINE (Topological benchmarking of GRN inference from scRNA-Sequencing data)
Arc Virtual Cell Atlas
Genome modeling and design across all domains of life
A tool for analyzing trascriptomes of millions of single cells.
Cloud-based scalable and efficient single-cell genomics workflows
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses