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check coverage across webchem#264

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Merged

stitam merged 43 commits intoropensci:masterropensci/webchem:masterfrom Aariq:integrationAariq/webchem:integrationCopy head branch name to clipboardJul 8, 2020

+743-351

Commits

Commits on Jun 16, 2020

• added from arguments to function with match.arg()

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  edeb0ac

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• changed "type" argument to "from" for consistency

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  7a7d7cb

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• added "query" and "from" arguments

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  8a853c4

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• Made possible "from" arguments more consistent

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  94a4994

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• added "cas" as a possible value for "from" and fixed ropensci#255 issue with _R_CHECK_LENGTH_1_CONDITION_ failing on CRAN

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  eaffafc

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• update tests and news

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  af8a545

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• added case-insensitive arg matching

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  1f8e674

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• made arguments case-insenstivie

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  33852b5

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• added autotranslate function draft

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  eba73cf

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• re-built documentation

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  ed97036

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• added dots to absorb unused arguments

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  c67d074

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• uniformity of outputs

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  c5e15a8

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• added check_coverage() function

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  b51ab91

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• updated docs

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  aa1f014

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• added plot output (for fun and testing). need to eventually change to base R plot I think.

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  b4db84b

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• added additional translators

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  1864fa3

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• removed additional translators because they are never used, I think.

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  859f9b7

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• moved to separate r file

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  924af45

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• added tests

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  ace8aca

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• fixed another skipped test ropensci#255

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  18ee4f5

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• finishing touches

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  91471b2

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• added Suggests to make plotting work.

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  18ab9b9

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• I don't know why these tests are failing. They work when run manually in a fresh R session.

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  52b0913

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• fixed a bug in chooser() utility I didn't know existed

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  e910965

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• added deprecated arguments to documentation

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  b3f7a7c

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• REALLY fixed bug in chooser()

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  fd220c8

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• switched NA to NA_character_

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  bd97009

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• Revert "switched NA to NA_character_"

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  b8f9289

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• fixed merge

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  6e24d73

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Commits on Jun 19, 2020

• changed function name from check_coverage to has_entry

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  14ccbd2

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• pass NAs through

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  398a504

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• switched to base R plotting

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  86efab9

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• small fixes

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  a41f299

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Commits on Jun 23, 2020

• updated pc_synonyms cts_convert, and cir_query to use match instead of choices ropensci#263

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• changed get_etoxid to use matcher() internally. Added warning for match = "best" and from != "name". Match result output is now just the chemical name.

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  4deeec3

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• changed default match = . updated tests

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  f6aa772

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• fix tests

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  b83aa1a

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Commits on Jun 27, 2020

• addressing review of PR

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  7c3a889

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• add skips for integration function tests.

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  e29b476

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Commits on Jul 2, 2020

• change pan example, update a test.

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  76c32a8

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Commits on Jul 3, 2020

• lintr suggestions

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  99b5284

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Commits on Jul 7, 2020

• change autotranslate to with_cts and make unexported. Re-run documentation.

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  fdf6547

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Commits on Jul 8, 2020

• changed function name from has_entry to find_db. Other minor changes to appease check()

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