requirements.txt

# This file was autogenerated by uv via the following command:
#    uv pip compile requirements.in -o requirements.txt
aiohttp==3.9.5
    # via
    #   aiohttp-retry
    #   fsspec
aiohttp-retry==2.8.3
    # via
    #   dvc-http
    #   scmrepo
aiosignal==1.3.1
    # via aiohttp
amqp==5.2.0
    # via kombu
annotated-types==0.7.0
    # via pydantic
antlr4-python3-runtime==4.9.3
    # via
    #   hydra-core
    #   omegaconf
appdirs==1.4.4
    # via iterative-telemetry
astroid==2.15.8
    # via pylint
async-timeout==4.0.3
    # via aiohttp
asyncssh==2.14.2
    # via scmrepo
atpublic==4.1.0
    # via flufl-lock
attrs==23.2.0
    # via
    #   aiohttp
    #   dvc
    #   dvc-data
    #   sqltrie
billiard==4.2.0
    # via celery
black==23.12.1
    # via -r requirements.in
blosc2==2.7.0
    # via tables
celery==5.4.0
    # via
    #   dvc
    #   dvc-task
certifi==2024.6.2
    # via requests
cffi==1.16.0
    # via
    #   cryptography
    #   pygit2
cfgv==3.4.0
    # via pre-commit
charset-normalizer==3.3.2
    # via requests
click==8.1.7
    # via
    #   black
    #   celery
    #   click-didyoumean
    #   click-plugins
    #   click-repl
    #   typer
click-didyoumean==0.3.1
    # via celery
click-plugins==1.1.1
    # via celery
click-repl==0.3.0
    # via celery
colorama==0.4.6
    # via dvc
configobj==5.0.8
    # via dvc
contourpy==1.2.1
    # via matplotlib
corner==2.2.2
    # via lyscripts
cryptography==42.0.8
    # via asyncssh
cycler==0.12.1
    # via matplotlib
dictdiffer==0.9.0
    # via dvc-data
dill==0.3.8
    # via pylint
diskcache==5.6.3
    # via dvc-data
distlib==0.3.8
    # via virtualenv
distro==1.9.0
    # via
    #   dvc
    #   iterative-telemetry
dpath==2.2.0
    # via dvc
dulwich==0.22.1
    # via
    #   dvc
    #   dvc-studio-client
    #   scmrepo
dvc==3.51.2
    # via -r requirements.in
dvc-data==3.15.1
    # via dvc
dvc-http==2.32.0
    # via dvc
dvc-objects==5.1.0
    # via
    #   dvc
    #   dvc-data
dvc-render==1.0.2
    # via dvc
dvc-studio-client==0.21.0
    # via dvc
dvc-task==0.4.0
    # via dvc
emcee==3.1.6
    # via
    #   lymph-model
    #   lyscripts
entrypoints==0.4
    # via gto
filelock==3.15.4
    # via
    #   iterative-telemetry
    #   virtualenv
flatten-dict==0.4.2
    # via dvc
flufl-lock==7.1.1
    # via dvc
fonttools==4.53.0
    # via matplotlib
frozenlist==1.4.1
    # via
    #   aiohttp
    #   aiosignal
fsspec==2024.6.1
    # via
    #   dvc
    #   dvc-data
    #   dvc-http
    #   dvc-objects
    #   scmrepo
funcy==2.0
    # via
    #   dvc
    #   dvc-data
    #   dvc-objects
    #   dvc-task
    #   gto
    #   scmrepo
gitdb==4.0.11
    # via gitpython
gitpython==3.1.43
    # via scmrepo
grandalf==0.8
    # via dvc
gto==1.7.1
    # via dvc
h5py==3.11.0
    # via
    #   lymph-model
    #   lyscripts
hydra-core==1.3.2
    # via dvc
identify==2.5.36
    # via pre-commit
idna==3.7
    # via
    #   requests
    #   yarl
isort==5.13.2
    # via pylint
iterative-telemetry==0.0.8
    # via dvc
joblib==1.4.2
    # via scikit-learn
kiwisolver==1.4.5
    # via matplotlib
kombu==5.3.7
    # via
    #   celery
    #   dvc
    #   dvc-task
lazy-object-proxy==1.10.0
    # via astroid
lymph-model==0.4.3
    # via lyscripts
lyscripts==0.7.3
    # via -r requirements.in
markdown-it-py==3.0.0
    # via rich
matplotlib==3.9.0
    # via
    #   -r requirements.in
    #   corner
    #   lyscripts
    #   matplotlib-venn
    #   seaborn
matplotlib-venn==0.11.10
    # via -r requirements.in
mccabe==0.7.0
    # via pylint
mdurl==0.1.2
    # via markdown-it-py
msgpack==1.0.8
    # via blosc2
multidict==6.0.5
    # via
    #   aiohttp
    #   yarl
mypy-extensions==1.0.0
    # via black
ndindex==1.8
    # via blosc2
networkx==3.3
    # via dvc
nodeenv==1.9.1
    # via pre-commit
numexpr==2.10.1
    # via
    #   blosc2
    #   tables
numpy==1.26.4
    # via
    #   -r requirements.in
    #   blosc2
    #   contourpy
    #   emcee
    #   h5py
    #   lymph-model
    #   lyscripts
    #   matplotlib
    #   matplotlib-venn
    #   numexpr
    #   pandas
    #   patsy
    #   scikit-learn
    #   scipy
    #   seaborn
    #   statsmodels
    #   tables
omegaconf==2.3.0
    # via
    #   dvc
    #   hydra-core
orjson==3.10.5
    # via sqltrie
packaging==24.1
    # via
    #   black
    #   dvc
    #   hydra-core
    #   matplotlib
    #   statsmodels
    #   tables
pandas==2.2.2
    # via
    #   lymph-model
    #   lyscripts
    #   seaborn
    #   statsmodels
pathspec==0.12.1
    # via
    #   black
    #   dvc
    #   scmrepo
patsy==0.5.6
    # via statsmodels
pillow==10.3.0
    # via matplotlib
platformdirs==3.11.0
    # via
    #   black
    #   dvc
    #   pylint
    #   virtualenv
pre-commit==3.7.1
    # via -r requirements.in
prompt-toolkit==3.0.47
    # via click-repl
psutil==6.0.0
    # via
    #   dvc
    #   flufl-lock
py-cpuinfo==9.0.0
    # via
    #   blosc2
    #   tables
pycparser==2.22
    # via cffi
pydantic==2.7.4
    # via gto
pydantic-core==2.18.4
    # via pydantic
pydot==2.0.0
    # via dvc
pygit2==1.15.0
    # via scmrepo
pygments==2.18.0
    # via rich
pygtrie==2.5.0
    # via
    #   dvc
    #   dvc-data
    #   scmrepo
    #   sqltrie
pylint==2.17.7
    # via -r requirements.in
pyparsing==3.1.2
    # via
    #   dvc
    #   grandalf
    #   matplotlib
    #   pydot
python-dateutil==2.9.0.post0
    # via
    #   celery
    #   matplotlib
    #   pandas
pytz==2024.1
    # via pandas
pyyaml==6.0.1
    # via
    #   lyscripts
    #   omegaconf
    #   pre-commit
requests==2.32.3
    # via
    #   dvc
    #   dvc-studio-client
    #   iterative-telemetry
rich==13.7.1
    # via
    #   dvc
    #   gto
    #   lyscripts
    #   rich-argparse
    #   typer
rich-argparse==1.5.2
    # via lyscripts
ruamel-yaml==0.18.6
    # via
    #   dvc
    #   gto
ruamel-yaml-clib==0.2.8
    # via ruamel-yaml
scikit-learn==1.5.0
    # via -r requirements.in
scipy==1.14.0
    # via
    #   -r requirements.in
    #   lymph-model
    #   lyscripts
    #   matplotlib-venn
    #   scikit-learn
    #   statsmodels
scmrepo==3.3.5
    # via
    #   dvc
    #   gto
seaborn==0.13.2
    # via -r requirements.in
semver==3.0.2
    # via gto
setuptools==70.1.1
    # via zc-lockfile
shellingham==1.5.4
    # via typer
shortuuid==1.0.13
    # via
    #   dvc
    #   dvc-task
shtab==1.7.1
    # via dvc
six==1.16.0
    # via
    #   configobj
    #   flatten-dict
    #   patsy
    #   python-dateutil
smmap==5.0.1
    # via gitdb
sqltrie==0.11.0
    # via dvc-data
statsmodels==0.14.2
    # via -r requirements.in
tables==3.9.2
    # via
    #   lymph-model
    #   lyscripts
tabulate==0.9.0
    # via
    #   dvc
    #   gto
threadpoolctl==3.5.0
    # via scikit-learn
tomli==2.0.1
    # via
    #   black
    #   pylint
tomlkit==0.12.5
    # via
    #   dvc
    #   pylint
tqdm==4.66.4
    # via
    #   dvc
    #   dvc-data
    #   fsspec
    #   lymph-model
    #   scmrepo
typer==0.12.3
    # via gto
typing-extensions==4.12.2
    # via
    #   astroid
    #   asyncssh
    #   black
    #   pydantic
    #   pydantic-core
    #   typer
tzdata==2024.1
    # via
    #   celery
    #   pandas
urllib3==2.2.2
    # via
    #   dulwich
    #   requests
vine==5.1.0
    # via
    #   amqp
    #   celery
    #   kombu
virtualenv==20.26.3
    # via pre-commit
voluptuous==0.15.1
    # via
    #   dvc
    #   dvc-studio-client
wcwidth==0.2.13
    # via prompt-toolkit
wrapt==1.16.0
    # via astroid
xlrd==2.0.1
    # via lyscripts
yarl==1.9.4
    # via aiohttp
zc-lockfile==3.0.post1
    # via dvc