-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathNAMESPACE
251 lines (250 loc) · 9.68 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
# Generated by roxygen2: do not edit by hand
S3method(add_mcmc_attributes,default)
S3method(add_mcmc_attributes,dreamer_beta)
S3method(add_mcmc_attributes,dreamer_beta_binary)
S3method(add_mcmc_attributes,dreamer_binary)
S3method(add_mcmc_class,dreamer_beta)
S3method(add_mcmc_class,dreamer_beta_binary)
S3method(add_mcmc_class,dreamer_emax)
S3method(add_mcmc_class,dreamer_emax_binary)
S3method(add_mcmc_class,dreamer_exp)
S3method(add_mcmc_class,dreamer_exp_binary)
S3method(add_mcmc_class,dreamer_independent_binary)
S3method(add_mcmc_class,dreamer_independent_continuous)
S3method(add_mcmc_class,dreamer_linear)
S3method(add_mcmc_class,dreamer_linear_binary)
S3method(add_mcmc_class,dreamer_loglinear)
S3method(add_mcmc_class,dreamer_loglinear_binary)
S3method(add_mcmc_class,dreamer_logquad)
S3method(add_mcmc_class,dreamer_logquad_binary)
S3method(add_mcmc_class,dreamer_quad)
S3method(add_mcmc_class,dreamer_quad_binary)
S3method(any_independent,default)
S3method(any_independent,dreamer_bma)
S3method(diagnostics,dreamer_bma)
S3method(diagnostics,dreamer_mcmc)
S3method(dreamer_mean,dreamer_mcmc_beta)
S3method(dreamer_mean,dreamer_mcmc_beta_binary)
S3method(dreamer_mean,dreamer_mcmc_emax)
S3method(dreamer_mean,dreamer_mcmc_emax_binary)
S3method(dreamer_mean,dreamer_mcmc_exp)
S3method(dreamer_mean,dreamer_mcmc_exp_binary)
S3method(dreamer_mean,dreamer_mcmc_independent)
S3method(dreamer_mean,dreamer_mcmc_independent_binary)
S3method(dreamer_mean,dreamer_mcmc_linear)
S3method(dreamer_mean,dreamer_mcmc_linear_binary)
S3method(dreamer_mean,dreamer_mcmc_loglinear)
S3method(dreamer_mean,dreamer_mcmc_loglinear_binary)
S3method(dreamer_mean,dreamer_mcmc_logquad)
S3method(dreamer_mean,dreamer_mcmc_logquad_binary)
S3method(dreamer_mean,dreamer_mcmc_quad)
S3method(dreamer_mean,dreamer_mcmc_quad_binary)
S3method(get_dose,dreamer_mcmc_beta)
S3method(get_dose,dreamer_mcmc_beta_binary)
S3method(get_dose,dreamer_mcmc_emax)
S3method(get_dose,dreamer_mcmc_emax_binary)
S3method(get_dose,dreamer_mcmc_exp)
S3method(get_dose,dreamer_mcmc_exp_binary)
S3method(get_dose,dreamer_mcmc_linear)
S3method(get_dose,dreamer_mcmc_linear_binary)
S3method(get_dose,dreamer_mcmc_loglinear)
S3method(get_dose,dreamer_mcmc_loglinear_binary)
S3method(get_dose,dreamer_mcmc_logquad)
S3method(get_dose,dreamer_mcmc_logquad_binary)
S3method(get_dose,dreamer_mcmc_quad)
S3method(get_dose,dreamer_mcmc_quad_binary)
S3method(get_extreme,default)
S3method(get_extreme,dreamer_mcmc_beta)
S3method(get_extreme,dreamer_mcmc_beta_binary)
S3method(get_extreme,dreamer_mcmc_emax)
S3method(get_extreme,dreamer_mcmc_emax_binary)
S3method(get_extreme,dreamer_mcmc_exp)
S3method(get_extreme,dreamer_mcmc_exp_binary)
S3method(get_extreme,dreamer_mcmc_independent)
S3method(get_extreme,dreamer_mcmc_independent_binary)
S3method(get_extreme,dreamer_mcmc_linear)
S3method(get_extreme,dreamer_mcmc_linear_binary)
S3method(get_extreme,dreamer_mcmc_loglinear)
S3method(get_extreme,dreamer_mcmc_loglinear_binary)
S3method(get_extreme,dreamer_mcmc_logquad)
S3method(get_extreme,dreamer_mcmc_logquad_binary)
S3method(get_extreme,dreamer_mcmc_quad)
S3method(get_extreme,dreamer_mcmc_quad_binary)
S3method(get_jags_data_hyperparms,default)
S3method(get_jags_data_hyperparms,dreamer_independent)
S3method(get_jags_like_file,dreamer_beta)
S3method(get_jags_like_file,dreamer_beta_binary)
S3method(get_jags_like_file,dreamer_emax)
S3method(get_jags_like_file,dreamer_emax_binary)
S3method(get_jags_like_file,dreamer_exp)
S3method(get_jags_like_file,dreamer_exp_binary)
S3method(get_jags_like_file,dreamer_independent_binary)
S3method(get_jags_like_file,dreamer_independent_continuous)
S3method(get_jags_like_file,dreamer_linear)
S3method(get_jags_like_file,dreamer_linear_binary)
S3method(get_jags_like_file,dreamer_loglinear)
S3method(get_jags_like_file,dreamer_loglinear_binary)
S3method(get_jags_like_file,dreamer_logquad)
S3method(get_jags_like_file,dreamer_logquad_binary)
S3method(get_jags_like_file,dreamer_quad)
S3method(get_jags_like_file,dreamer_quad_binary)
S3method(get_jags_prior_file,dreamer_beta)
S3method(get_jags_prior_file,dreamer_beta_binary)
S3method(get_jags_prior_file,dreamer_emax)
S3method(get_jags_prior_file,dreamer_emax_binary)
S3method(get_jags_prior_file,dreamer_exp)
S3method(get_jags_prior_file,dreamer_exp_binary)
S3method(get_jags_prior_file,dreamer_independent_binary)
S3method(get_jags_prior_file,dreamer_independent_continuous)
S3method(get_jags_prior_file,dreamer_linear)
S3method(get_jags_prior_file,dreamer_linear_binary)
S3method(get_jags_prior_file,dreamer_loglinear)
S3method(get_jags_prior_file,dreamer_loglinear_binary)
S3method(get_jags_prior_file,dreamer_logquad)
S3method(get_jags_prior_file,dreamer_logquad_binary)
S3method(get_jags_prior_file,dreamer_quad)
S3method(get_jags_prior_file,dreamer_quad_binary)
S3method(get_longitudinal_likelihood_file,dreamer_longitudinal_idp)
S3method(get_longitudinal_likelihood_file,dreamer_longitudinal_itp)
S3method(get_longitudinal_likelihood_file,dreamer_longitudinal_linear)
S3method(get_longitudinal_prior_file,dreamer_longitudinal_idp)
S3method(get_longitudinal_prior_file,dreamer_longitudinal_itp)
S3method(get_longitudinal_prior_file,dreamer_longitudinal_linear)
S3method(get_longitudinal_vnames,default)
S3method(get_longitudinal_vnames,dreamer_longitudinal_idp)
S3method(get_longitudinal_vnames,dreamer_longitudinal_itp)
S3method(get_longitudinal_vnames,dreamer_longitudinal_linear)
S3method(get_n_params,dreamer_mcmc_beta)
S3method(get_n_params,dreamer_mcmc_beta_binary)
S3method(get_n_params,dreamer_mcmc_emax)
S3method(get_n_params,dreamer_mcmc_emax_binary)
S3method(get_n_params,dreamer_mcmc_exp)
S3method(get_n_params,dreamer_mcmc_exp_binary)
S3method(get_n_params,dreamer_mcmc_independent)
S3method(get_n_params,dreamer_mcmc_independent_binary)
S3method(get_n_params,dreamer_mcmc_linear)
S3method(get_n_params,dreamer_mcmc_linear_binary)
S3method(get_n_params,dreamer_mcmc_loglinear)
S3method(get_n_params,dreamer_mcmc_loglinear_binary)
S3method(get_n_params,dreamer_mcmc_logquad)
S3method(get_n_params,dreamer_mcmc_logquad_binary)
S3method(get_n_params,dreamer_mcmc_quad)
S3method(get_n_params,dreamer_mcmc_quad_binary)
S3method(get_vnames_model,dreamer_beta)
S3method(get_vnames_model,dreamer_beta_binary)
S3method(get_vnames_model,dreamer_emax)
S3method(get_vnames_model,dreamer_emax_binary)
S3method(get_vnames_model,dreamer_exp)
S3method(get_vnames_model,dreamer_exp_binary)
S3method(get_vnames_model,dreamer_independent_binary)
S3method(get_vnames_model,dreamer_independent_continuous)
S3method(get_vnames_model,dreamer_linear)
S3method(get_vnames_model,dreamer_linear_binary)
S3method(get_vnames_model,dreamer_loglinear)
S3method(get_vnames_model,dreamer_loglinear_binary)
S3method(get_vnames_model,dreamer_logquad)
S3method(get_vnames_model,dreamer_logquad_binary)
S3method(get_vnames_model,dreamer_quad)
S3method(get_vnames_model,dreamer_quad_binary)
S3method(plot,dreamer_mcmc)
S3method(plot_comparison,default)
S3method(plot_comparison,dreamer_bma)
S3method(plot_trace,dreamer_bma)
S3method(plot_trace,dreamer_mcmc)
S3method(post_medx,dreamer_bma)
S3method(post_medx,dreamer_mcmc)
S3method(post_medx,dreamer_mcmc_independent)
S3method(post_medx,dreamer_mcmc_independent_binary)
S3method(post_perc_effect,dreamer_bma)
S3method(post_perc_effect,dreamer_mcmc)
S3method(posterior,default)
S3method(posterior,dreamer_bma)
S3method(posterior,dreamer_mcmc)
S3method(posterior,dreamer_mcmc_independent)
S3method(prep_jags_data,dreamer_beta)
S3method(prep_jags_data,dreamer_beta_binary)
S3method(prep_jags_data,dreamer_binary)
S3method(prep_jags_data,dreamer_continuous)
S3method(prep_jags_data,dreamer_independent_binary)
S3method(prep_jags_data,dreamer_independent_continuous)
S3method(print,dreamer_binary)
S3method(print,dreamer_bma)
S3method(print,dreamer_continuous)
S3method(print,dreamer_mcmc)
S3method(remove_t_max,default)
S3method(remove_t_max,dreamer_longitudinal_idp)
S3method(summary,dreamer_bma)
S3method(summary,dreamer_mcmc)
export(diagnostics)
export(dreamer_data_beta)
export(dreamer_data_beta_binary)
export(dreamer_data_emax)
export(dreamer_data_emax_binary)
export(dreamer_data_exp)
export(dreamer_data_exp_binary)
export(dreamer_data_independent)
export(dreamer_data_independent_binary)
export(dreamer_data_linear)
export(dreamer_data_linear_binary)
export(dreamer_data_loglinear)
export(dreamer_data_loglinear_binary)
export(dreamer_data_logquad)
export(dreamer_data_logquad_binary)
export(dreamer_data_quad)
export(dreamer_data_quad_binary)
export(dreamer_mcmc)
export(dreamer_plot_prior)
export(model_beta)
export(model_beta_binary)
export(model_emax)
export(model_emax_binary)
export(model_exp)
export(model_exp_binary)
export(model_independent)
export(model_independent_binary)
export(model_linear)
export(model_linear_binary)
export(model_loglinear)
export(model_loglinear_binary)
export(model_logquad)
export(model_logquad_binary)
export(model_longitudinal_idp)
export(model_longitudinal_itp)
export(model_longitudinal_linear)
export(model_quad)
export(model_quad_binary)
export(plot_comparison)
export(plot_trace)
export(post_medx)
export(post_perc_effect)
export(posterior)
export(pr_eoi)
export(pr_med)
export(pr_medx)
import(coda)
importFrom(dplyr,"%>%")
importFrom(dplyr,.data)
importFrom(dplyr,across)
importFrom(dplyr,any_of)
importFrom(dplyr,desc)
importFrom(dplyr,everything)
importFrom(dplyr,n)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(rlang,":=")
importFrom(stats,dbinom)
importFrom(stats,dnorm)
importFrom(stats,pnorm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,var)