pyproject.toml

[build-system]
requires = ["setuptools>=60", "setuptools-scm>=8.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name="sequali"
description="Sequali is a QC tool that generates useful graphs for both short and long-read data."
authors = [
    {name = "Ruben Vorderman", email = "r.h.p.vorderman@lumc.nl"}
]
keywords=[
    "FASTQ",
    "sequencing quality",
    "uBAM",
    "QC",
    "nanopore",
    "illumina",
]
readme = "README.rst"
license = {text = "AGPL-v3.0"}
classifiers = [
        "Programming Language :: Python :: 3 :: Only",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
        "Programming Language :: Python :: 3.13",
        "Development Status :: 4 - Beta",
        "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
]
requires-python = ">=3.10"
dependencies = [
        "xopen>=2.0.0",
        "pygal>=3.0.4",
        "tqdm",
]
dynamic = ["version"]

[project.scripts]
sequali = "sequali.__main__:main"
sequali-report = "sequali.__main__:sequali_report"

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.exclude-package-data]
sequali = ["*.c", "*.h"]

[tool.setuptools.package-data]
sequali = [
    '*.pyi',
    'py.typed',
    'contaminants/*',
    'adapters/*',
    'static/*',
    'pygal.js/README.md',
    'pygal.js/2.0.x/*'
]
[project.urls]
"Documentation" = "https://sequali.readthedocs.io"
"Homepage" = "https://github.com/rhpvorderman/sequali"
"Issue tracker" = "https://github.com/rhpvorderman/sequali/issues"

[tool.setuptools_scm]
write_to = "src/sequali/_version.py"