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1. Codon-Usage-in-Python Codon-Usage-in-Python Public

   My Python3 package to compute common codon usage statistics given a FASTA of DNA sequences

   Python 12 1

2. data_science_ML_lessons_biology data_science_ML_lessons_biology Public

   Tutorials on data science/machine learning using Python with a life-science perspective. When I started learning programming and machine learning, most of the examples were from other fields like I…

   Jupyter Notebook 11 4

3. Codon2Vec Codon2Vec Public

   Python package for applying deep learning to predict expression potential ('high' or 'low') directly from protein coding sequences (CDS).

   Python 2

4. Misc_bioinformatics Misc_bioinformatics Public

   Bioinfomatics scripts from grad school when i worked primarily with Drosophila annotation files (Flybase)

   Python 2 1

5. Adaptive_Codon_Usage_Kingdom_Fungi Adaptive_Codon_Usage_Kingdom_Fungi Public

   Essential code to reproduce figures from my fungal genomics publication

   Jupyter Notebook

6. Probablistic_Bayesian_Models Probablistic_Bayesian_Models Public

   Probabilistic programming based on Bayesian Inference Python (PyMC3). One of my computational learning goals is probablistic machine learning.

   Jupyter Notebook