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@respiratory-immunology-lab

Respiratory Immunology lab

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  1. metabolome-lipidome-MSDIAL metabolome-lipidome-MSDIAL Public

    Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

    R 15 6

  2. microbiome-shotgun microbiome-shotgun Public

    Pipeline for shotgun metagenomics analyses using Sunbeam wrapper scripts and extensions.

    R 3 1

  3. transcriptome-QiaSeq transcriptome-QiaSeq Public

    Pipeline for scRNAseq (or low input RNAseq) sequences analyses.

    2

  4. microbiome-dada2 microbiome-dada2 Public

    DADA2 pipeline for sequence variant identification of targeted amplicons sequencing.

    1 1

  5. VariantCall-OVarFlow VariantCall-OVarFlow Public

    1

  6. scRNA_with_STARsolo scRNA_with_STARsolo Public

    Processing DB Rhapsody scRNA data with STARsolo

    1

Repositories

Showing 10 of 11 repositories
  • microbiome-dada2 Public

    DADA2 pipeline for sequence variant identification of targeted amplicons sequencing.

    respiratory-immunology-lab/microbiome-dada2’s past year of commit activity
    1 MIT 1 0 0 Updated May 23, 2024
  • metabolome-lipidome-MSDIAL Public

    Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

    respiratory-immunology-lab/metabolome-lipidome-MSDIAL’s past year of commit activity
    R 15 MIT 6 0 0 Updated Feb 5, 2024
  • scRNA_with_STARsolo Public

    Processing DB Rhapsody scRNA data with STARsolo

    respiratory-immunology-lab/scRNA_with_STARsolo’s past year of commit activity
    1 0 0 0 Updated Feb 28, 2023
  • bioinformatic-tools Public

    A list of useful tools for analysis of bioinformatic datasets.

    respiratory-immunology-lab/bioinformatic-tools’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 23, 2022
  • microbiome-shotgun-biobakery Public
    respiratory-immunology-lab/microbiome-shotgun-biobakery’s past year of commit activity
    R 0 MIT 1 0 0 Updated Nov 14, 2022
  • microbiome-shotgun Public

    Pipeline for shotgun metagenomics analyses using Sunbeam wrapper scripts and extensions.

    respiratory-immunology-lab/microbiome-shotgun’s past year of commit activity
    R 3 MIT 1 0 0 Updated Sep 25, 2022
  • sbx_kraken2bracken Public

    Sunbeam extension to use Kraken2 combined with Bracken

    respiratory-immunology-lab/sbx_kraken2bracken’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 7, 2022
  • genomics-SNPs Public
    respiratory-immunology-lab/genomics-SNPs’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 1, 2021
  • VariantCall-OVarFlow Public
    respiratory-immunology-lab/VariantCall-OVarFlow’s past year of commit activity
    1 MIT 0 0 0 Updated Jun 30, 2021
  • transcriptome-QiaSeq Public

    Pipeline for scRNAseq (or low input RNAseq) sequences analyses.

    respiratory-immunology-lab/transcriptome-QiaSeq’s past year of commit activity
    2 MIT 0 0 0 Updated Jun 24, 2021
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