timeseries and scripts

.github/workflows/timeseries.yml

@@ -0,0 +1,130 @@
+# n+1, n+2, n+3 pairs for a given burst
+name: Timeseries
+
+on:
+  workflow_dispatch:
+    inputs:
+      fullBurstID:
+        type: string
+        required: true
+        description: ESA Burst Identifier (RelativeObit, ID, Subswath)
+        default: '012_023790_IW1'
+      polarization:
+        type: choice
+        required: true
+        description: Polarization
+        default: VV
+        options: 
+          - VV
+          - VH
+          - HH
+      nlooks:
+        type: choice
+        required: true
+        description: Range x Azimuth Looks
+        default: 20x4
+        options: 
+          - 20x4
+          - 10x2
+          - 5x1
+
+jobs:
+  get-burst-list:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -el {0}
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v4
+
+      - name: Install Conda environment with Micromamba
+        uses: mamba-org/setup-micromamba@v1
+        with:
+          cache-environment: true
+          environment-file: environment.yml
+
+      # https://words.yuvi.in/post/python-in-github-actions/
+      - name: Search ASF for bursts
+        id: asf-search
+        shell: python -u {0}
+        run: | 
+          import asf_search as asf
+          import os
+
+          results = asf.search(platform=[asf.PLATFORM.SENTINEL1], 
+                               processingLevel=asf.BURST, 
+                               polarization=${{ inputs.polarization }}),
+                               relativeBurstID=${{ inputs.fullBurstID }})
+          print('Results: ', len(results))
+          burstIDs = [x.meta['native-id'] for x in results]
+
+          with open(os.environ['GITHUB_OUTPUT'], 'a') as f:
+            print(f'BURST_IDS={burstIDs}', file=f)
+
+      - name: Test Burst Output
+        env:
+          BURST_IDS: ${{ steps.asf-search.outputs.BURST_IDS }}
+        run: |
+          echo $BURST_IDS
+
+  # hyp3-isce2-matrix:
+  #   needs: get-burst-list
+  #   runs-on: ubuntu-latest
+  #   defaults:
+  #     run:
+  #       shell: bash -el {0}
+  #   #strategy:
+  #   #  matrix:
+  #   #    secondary: [S1_023790_IW1_20231218T121430_VV_B9A6-BURST,S1_023790_IW1_20231230T121429_VV_B9CD-BURST,S1_023790_IW1_20240111T121428_VV_5827-BURST]
+
+  #   steps:
+      # - name: Checkout Repository
+      #   uses: actions/checkout@v4
+      #   with:
+      #       repository: 'ASFHyP3/hyp3-isce2'
+
+      # - name: Install Conda environment with Micromamba
+      #   uses: mamba-org/setup-micromamba@v1
+      #   with:
+      #     cache-environment: true
+      #     environment-file: environment.yml
+
+      # - name: Development install
+      #   run: pip install -e .
+
+      # - name: Configure AWS Credentials
+      #   uses: aws-actions/configure-aws-credentials@v4
+      #   with:
+      #       aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
+      #       aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
+      #       aws-region: us-west-2
+
+      # - name: Get Bucket Prefix
+      #   env:
+      #     REF: ${{ inputs.reference }}
+      #     SEC: ${{ matrix.secondary }} 
+      #   run: |
+      #     PREFIX=${REF:14:8}_${SEC:14:8}
+      #     echo "PREFIX=${PREFIX}" >> $GITHUB_ENV
+
+      # - name: Run Example Workflow
+      #   env: 
+      #       EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }}
+      #       EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD}}
+      #       ESA_USERNAME: ${{ secrets.ESA_USERNAME }}
+      #       ESA_PASSWORD: ${{ secrets.ESA_PASSWORD}}
+      #   run: |
+      #       python -m hyp3_isce2 ++process insar_tops_burst \
+      #       ${{ inputs.reference }}  \
+      #       ${{ matrix.secondary }}  \
+      #       --looks 20x4 \
+      #       --apply-water-mask False \
+      #       --bucket fufiters \
+      #       --bucket-prefix $PREFIX
+
+      # - name: Upload Hyp3 Output
+      #   uses: actions/upload-artifact@v4
+      #   with:
+      #     name: ${{ env.PREFIX }}
+      #     path: S1*.zip

.gitignore

@@ -1,3 +1,5 @@
+.vscode
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

environment.yml

@@ -0,0 +1,9 @@
+name: hyp3-stac
+channels:
+  - conda-forge
+dependencies:
+  - asf_search
+  - pystac
+  - rasterio
+  - rio-stac
+  - jsonschema