Upgrade the versions of some dependencies, including torch and pydicom.

Later versions include some security fixes.

setup.cfg

@@ -7,7 +7,7 @@ author_email =
 license_file = LICENSE.txt
 long_description = file: README.md
 long_description_content_type = text/markdown; charset=UTF-8; variant=GFM
-version = 1.2.0
+version = 1.2.1
 # url = 
 project_urls =
     ; Documentation = https://.../docs
@@ -32,22 +32,23 @@ python_requires = >=3.8
 # Version specifiers like >=2.2,<3.0 avoid problems due to API changes in
 # new major versions. This works if the required packages follow Semantic Versioning.
 # For more information, check out https://semver.org/.
-# Use --find-links https://download.pytorch.org/whl/cu113/torch_stable.html for torch libraries
+# Use --find-links https://download.pytorch.org/whl/cu117/torch_stable.html for torch libraries
 install_requires =
     importlib-metadata; python_version>="3.8"
     numpy==1.24.1
-    torch==1.11.0+cu113; sys_platform != "darwin"
-    torch==1.11.0; sys_platform == "darwin"
-    torchvision==0.12.0+cu113; sys_platform != "darwin"
-    torchvision==0.12.0; sys_platform == "darwin"
-    pytorch_lightning==1.5.6
+    torch==1.13.1+cu117; sys_platform != "darwin"
+    torch==1.13.1; sys_platform == "darwin"
+    torchvision==0.14.1+cu117; sys_platform != "darwin"
+    torchvision==0.14.1; sys_platform == "darwin"
+    pytorch_lightning==1.6.0
     scikit-learn==1.0.2
     tqdm==4.62.3
     lifelines==0.26.4
     opencv-python==4.5.4.60
     opencv-python-headless==4.5.4.60
     albumentations==1.1.0
-    pydicom==2.2.2
+    pillow>=10.2.0
+    pydicom==2.3.0
     torchio==0.18.74
     gdown==4.6.0
 

tox.ini

@@ -17,7 +17,7 @@ deps =
     # flake8
     # mypy
     # black
-install_command = pip install --pre --find-links https://download.pytorch.org/whl/cu113/torch_stable.html {opts} {packages}
+install_command = pip install --pre --find-links https://download.pytorch.org/whl/cu117/torch_stable.html {opts} {packages}
 commands =
     pytest {posargs}
     # black {toxinidir}/sybil --check