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Reactome

A curated pathway database

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  1. reactome2py reactome2py Public

    python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

    Python 30 9

  2. ReactomeGSA ReactomeGSA Public

    R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis

    R 22 5

  3. graph-core graph-core Public

    Models the Reactome knowledgebase into a interconnected graph

    Java 18 7

  4. pwp-browser pwp-browser Public

    A tool for visualising and interacting with pathways data

    Java 10 7

  5. content-service content-service Public

    The new Reactome REST API to access the data

    Java 10 5

  6. container container Public

    🚧 Repository for files for running a Reactome production-like environment inside a docker container. Currently, this project's status is "Work-In-Progress". 🚧

    Perl 9 4

Repositories

Showing 10 of 130 repositories
  • Java 0 1 0 0 Updated Apr 22, 2025
  • Website Public

    Contains the code and configuration for the website

    PHP 5 GPL-2.0 2 1 0 Updated Apr 22, 2025
  • BioPAX3Exporter Public

    Export of BioPAX Level 3 from graph database

    Java 0 0 0 0 Updated Apr 22, 2025
  • reactome_chatbot Public

    This is Reactomes chatbot to its database and search index

    Python 2 Apache-2.0 0 0 0 Updated Apr 17, 2025
  • reactome_galaxy Public

    This is for running the analysis service

    Kotlin 0 Apache-2.0 0 11 0 Updated Apr 17, 2025
  • TypeScript 0 0 0 0 Updated Apr 17, 2025
  • statistics-generator Public

    Cypher queries to generate automatically release statistics

    R 1 MIT 0 2 0 Updated Apr 14, 2025
  • release-orthoinference Public

    Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species

    Java 0 0 0 2 Updated Apr 11, 2025
  • release-download-directory Public

    Data-release-pipeline: Generation of files for the Reactome website download directory

    Java 0 1 10 1 Updated Apr 9, 2025
  • release-update-stable-ids Public

    Data-release-pipeline: Updates stable identifiers of manually curated instances

    Java 0 0 1 2 Updated Apr 7, 2025