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Describe the bug
I use Ketcher molecule editor and extract the molfile and use the molfile to display. On Ketcher I can add super atoms or abbreviations like tBu or OAc or COOH. When I try to render the molfile with RDKITJs (svg/canvas mode), I see a detached abbreviation at the corner. It looks weird and confusing.
Add a molecule with a superAtom (type OAc -> Enter -> and place it)
Export molfile
Use molfile to render on RDKit. And you will see OAc at the left corner (mostly)
Expected behavior
RDKit should understand super atoms and should either ignore it or render appropriately. Would be great if it can be tied to condense_abbreviations() function.
Screenshots
Desktop (please complete the following information):
OS: All OS. But I tried this on Mac and Windows.
Browser: Chrome mostly. But I think its independent of the browser. Its part of the SVG
Version: 2024.3.5-1.0.0
Smartphone (please complete the following information):
NA
The text was updated successfully, but these errors were encountered:
Describe the bug
I use Ketcher molecule editor and extract the molfile and use the molfile to display. On Ketcher I can add super atoms or abbreviations like tBu or OAc or COOH. When I try to render the molfile with RDKITJs (svg/canvas mode), I see a detached abbreviation at the corner. It looks weird and confusing.
To Reproduce
Steps to reproduce the behavior:
Expected behavior
RDKit should understand super atoms and should either ignore it or render appropriately. Would be great if it can be tied to
condense_abbreviations()
function.Screenshots
Desktop (please complete the following information):
Smartphone (please complete the following information):
The text was updated successfully, but these errors were encountered: