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conda_linux_x86_environment.yml
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name: mmugl
channels:
- https://conda.anaconda.org/pyg
- https://conda.anaconda.org/pytorch
- https://conda.anaconda.org/nvidia
- https://conda.anaconda.org/conda-forge
- defaults
- conda-forge
- bioconda
- main
- r
- pytorch
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- abseil-cpp=20210324.2=h2531618_0
- absl-py=0.15.0=pyhd3eb1b0_0
- aiohttp=3.8.1=py38h7f8727e_1
- aiosignal=1.2.0=pyhd3eb1b0_0
- anyio=3.5.0=py38h06a4308_0
- argon2-cffi=21.3.0=pyhd3eb1b0_0
- argon2-cffi-bindings=21.2.0=py38h7f8727e_0
- arrow-cpp=8.0.0=py38hfe422aa_1_cpu
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.1=pyhd3eb1b0_0
- atk-1.0=2.36.0=ha1a6a79_0
- attrs=21.4.0=pyhd3eb1b0_0
- aws-c-cal=0.5.11=h95a6274_0
- aws-c-common=0.6.2=h27cfd23_0
- aws-c-event-stream=0.2.7=h3541f99_13
- aws-c-io=0.10.5=hfb6a706_0
- aws-checksums=0.1.11=ha31a3da_7
- aws-sdk-cpp=1.8.186=hb4091e7_3
- babel=2.9.1=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.11.1=py38h06a4308_0
- blas=1.0=mkl
- bleach=4.1.0=pyhd3eb1b0_0
- blinker=1.4=py38h06a4308_0
- blosc=1.21.0=h4ff587b_1
- bokeh=2.4.3=py38h06a4308_0
- boost-cpp=1.73.0=h7f8727e_12
- bottleneck=1.3.5=py38h7deecbd_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotlipy=0.7.0=py38h27cfd23_1003
- brunsli=0.1=h2531618_0
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- c-blosc2=2.2.0=h7a311fb_0
- ca-certificates=2022.12.7=ha878542_0
- cachetools=4.2.2=pyhd3eb1b0_0
- cairo=1.16.0=h19f5f5c_2
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py38h74dc2b5_0
- cfitsio=3.470=h5893167_7
- charls=2.2.0=h2531618_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.0.4=py38h06a4308_0
- cloudpickle=2.0.0=pyhd3eb1b0_0
- colorama=0.4.5=py38h06a4308_0
- colorcet=3.0.0=py38h06a4308_0
- cryptography=37.0.1=py38h9ce1e76_0
- cudatoolkit=11.1.74=h6bb024c_0
- cycler=0.11.0=pyhd3eb1b0_0
- cymem=2.0.6=py38h295c915_0
- cython=0.29.30=py38h6a678d5_0
- cython-blis=0.7.7=py38hce1f21e_0
- cytoolz=0.11.0=py38h7b6447c_0
- dask=2022.2.1=pyhd3eb1b0_0
- dask-core=2022.2.1=pyhd3eb1b0_0
- dataclasses=0.8=pyh6d0b6a4_7
- datashader=0.14.1=py38h06a4308_0
- datashape=0.5.4=py38h06a4308_1
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- distributed=2022.2.1=pyhd3eb1b0_0
- entrypoints=0.4=py38h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.4.4=h295c915_0
- fdasrsf=2.3.12=py38h71fe488_0
- fftw=3.3.9=h27cfd23_1
- filelock=3.6.0=pyhd3eb1b0_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.13.1=h6c09931_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- fribidi=1.0.10=h7b6447c_0
- frozenlist=1.2.0=py38h7f8727e_0
- fsspec=2022.3.0=py38h06a4308_0
- future=0.18.2=py38_1
- gdk-pixbuf=2.42.8=h433bba3_0
- gflags=2.2.2=he6710b0_0
- giflib=5.2.1=h7b6447c_0
- glib=2.69.1=h4ff587b_1
- glog=0.6.0=h6f12383_0
- gobject-introspection=1.72.0=py38hbb6d50b_0
- google-auth=2.6.0=pyhd3eb1b0_0
- google-auth-oauthlib=0.4.4=pyhd3eb1b0_0
- googledrivedownloader=0.4=pyhd3deb0d_1
- gpy=1.10.0=py38h6c62de6_2
- graphite2=1.3.14=h295c915_1
- graphviz=2.50.0=h3cd0ef9_0
- grpc-cpp=1.43.2=h9e046d8_3
- grpcio=1.42.0=py38hce63b2e_0
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- gtk2=2.24.33=h73c1081_2
- gts=0.7.6=hb67d8dd_3
- harfbuzz=4.3.0=hd55b92a_0
- hdf5=1.12.1=h70be1eb_2
- heapdict=1.0.1=pyhd3eb1b0_0
- holoviews=1.15.0=py38h06a4308_0
- huggingface_hub=0.2.1=pyhd3eb1b0_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- ignite=0.4.9=py_0
- imagecodecs=2021.8.26=py38hb5ce8f7_1
- imageio=2.19.3=py38h06a4308_0
- importlib-metadata=4.11.3=py38h06a4308_0
- importlib_metadata=4.11.3=hd3eb1b0_0
- importlib_resources=5.2.0=pyhd3eb1b0_1
- intel-openmp=2021.4.0=h06a4308_3561
- ipdb=0.13.9=pyhd8ed1ab_0
- ipykernel=6.9.1=py38h06a4308_0
- ipython=8.4.0=py38h06a4308_0
- ipython_genutils=0.2.0=py38_0
- ipywidgets=7.6.5=pyhd3eb1b0_1
- jedi=0.18.1=py38h06a4308_1
- jinja2=3.0.3=pyhd3eb1b0_0
- joblib=1.1.0=pyhd3eb1b0_0
- jpeg=9e=h7f8727e_0
- json5=0.9.6=pyhd3eb1b0_0
- jsonschema=4.4.0=py38h06a4308_0
- jupyter=1.0.0=py38h06a4308_8
- jupyter_client=7.2.2=py38h06a4308_0
- jupyter_console=6.4.3=pyhd3eb1b0_0
- jupyter_core=4.10.0=py38h06a4308_0
- jupyter_server=1.18.1=py38h06a4308_0
- jupyterlab=3.3.2=pyhd3eb1b0_0
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.12.0=py38h06a4308_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- jxrlib=1.1=h7b6447c_2
- kiwisolver=1.4.2=py38h295c915_0
- krb5=1.19.2=hac12032_0
- langcodes=3.3.0=pyhd3eb1b0_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libaec=1.0.6=h9c3ff4c_0
- libblas=3.9.0=12_linux64_mkl
- libboost=1.73.0=h28710b8_12
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libcblas=3.9.0=12_linux64_mkl
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.84.0=h91b91d3_0
- libdeflate=1.8=h7f8727e_5
- libedit=3.1.20210910=h7f8727e_0
- libev=4.33=h7f8727e_1
- libevent=2.1.10=h9b69904_4
- libfaiss=1.7.1=cuda111hf54f04a_1_cuda
- libffi=3.3=he6710b0_2
- libgcc-ng=12.1.0=h8d9b700_16
- libgd=2.3.3=h695aa2c_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=12.1.0=h8d9b700_16
- libgoogle-cloud=1.36.0=h6945097_0
- liblapack=3.9.0=12_linux64_mkl
- libllvm11=11.1.0=h3826bc1_1
- libnghttp2=1.46.0=hce63b2e_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.19.4=h780b84a_0
- librsvg=2.54.4=h19fe530_0
- libsodium=1.0.18=h7b6447c_0
- libssh2=1.10.0=h8f2d780_0
- libstdcxx-ng=12.1.0=ha89aaad_16
- libthrift=0.16.0=h519c5ea_1
- libtiff=4.2.0=h2818925_1
- libtool=2.4.6=h295c915_1008
- libutf8proc=2.7.0=h7f98852_0
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libwebp=1.2.2=h55f646e_0
- libwebp-base=1.2.2=h7f8727e_0
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.14=h74e7548_0
- libzlib=1.2.12=h166bdaf_2
- libzopfli=1.0.3=he6710b0_0
- llvmlite=0.38.0=py38h4ff587b_0
- locket=1.0.0=py38h06a4308_0
- lz4-c=1.9.3=h295c915_1
- lzo=2.10=h7b6447c_2
- markdown=3.3.4=py38h06a4308_0
- markupsafe=2.1.1=py38h7f8727e_0
- matplotlib=3.5.1=py38h06a4308_1
- matplotlib-base=3.5.1=py38ha18d171_1
- matplotlib-inline=0.1.2=pyhd3eb1b0_2
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- mock=4.0.3=pyhd3eb1b0_0
- msgpack-python=1.0.3=py38hd09550d_0
- multidict=5.2.0=py38h7f8727e_2
- multipledispatch=0.6.0=py38_0
- munkres=1.1.4=py_0
- murmurhash=1.0.7=py38h295c915_0
- mypy=0.910=pyhd3eb1b0_0
- mypy_extensions=0.4.3=py38h06a4308_1
- nbclassic=0.3.5=pyhd3eb1b0_0
- nbclient=0.5.13=py38h06a4308_0
- nbconvert=6.4.4=py38h06a4308_0
- nbformat=5.3.0=py38h06a4308_0
- ncurses=6.3=h5eee18b_3
- nest-asyncio=1.5.5=py38h06a4308_0
- networkx=2.8.4=py38h06a4308_0
- ninja=1.10.2=h06a4308_5
- ninja-base=1.10.2=hd09550d_5
- notebook=6.4.12=py38h06a4308_0
- numba=0.55.1=py38h51133e4_0
- numexpr=2.8.3=py38h807cd23_0
- numpy=1.21.5=py38h6c91a56_3
- numpy-base=1.21.5=py38ha15fc14_3
- oauthlib=3.2.0=pyhd3eb1b0_1
- openjpeg=2.4.0=h3ad879b_0
- openssl=1.1.1s=h0b41bf4_1
- orc=1.7.3=h1be678f_0
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.4.4=py38h6a678d5_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- panel=0.13.1=py38h06a4308_0
- pango=1.50.7=h05da053_0
- param=1.12.0=pyhd3eb1b0_0
- paramz=0.9.5=py_0
- parso=0.8.3=pyhd3eb1b0_0
- partd=1.2.0=pyhd3eb1b0_1
- patsy=0.5.2=py38h06a4308_1
- pcre=8.45=h295c915_0
- pexpect=4.8.0=py38_0
- pickleshare=0.7.5=py38_1000
- pillow=9.2.0=py38hace64e9_1
- pip=22.2.2=py38h06a4308_0
- pixman=0.40.0=h7f8727e_1
- preshed=3.0.6=py38h295c915_0
- prometheus_client=0.14.1=py38h06a4308_0
- prompt-toolkit=3.0.20=pyhd3eb1b0_0
- prompt_toolkit=3.0.20=hd3eb1b0_0
- protobuf=3.19.4=py38h709712a_0
- psutil=5.9.0=py38h5eee18b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pyarrow=8.0.0=py38h992f0b0_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pyct=0.4.8=py38h06a4308_1
- pydeprecate=0.3.2=pyhd8ed1ab_0
- pyg=2.0.3=py38_torch_1.9.0_cu111
- pygments=2.11.2=pyhd3eb1b0_0
- pygraphviz=1.9=py38h5eee18b_0
- pyjwt=2.4.0=py38h06a4308_0
- pynndescent=0.5.4=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.9.2=py38h05f1152_4
- pyrsistent=0.18.0=py38heee7806_0
- pysocks=1.7.1=py38h06a4308_0
- pytables=3.7.0=py38h9da3b7f_0
- python=3.8.13=h12debd9_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.15.1=pyhd3eb1b0_0
- python-louvain=0.15=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=1.9.1=py3.8_cuda11.1_cudnn8.0.5_0
- pytorch-cluster=1.5.9=py38_torch_1.9.0_cu111
- pytorch-lightning=1.6.4=pyhd8ed1ab_0
- pytorch-scatter=2.0.9=py38_torch_1.9.0_cu111
- pytorch-sparse=0.6.12=py38_torch_1.9.0_cu111
- pytorch-spline-conv=1.2.1=py38_torch_1.9.0_cu111
- pytz=2022.1=py38h06a4308_0
- pyviz_comms=2.0.2=pyhd3eb1b0_0
- pywavelets=1.3.0=py38h7f8727e_0
- pyyaml=6.0=py38h7f8727e_1
- pyzmq=23.2.0=py38h6a678d5_0
- qt=5.9.7=h5867ecd_1
- qtconsole=5.3.1=py38h06a4308_1
- qtpy=2.0.1=pyhd3eb1b0_0
- re2=2022.02.01=h9c3ff4c_0
- readline=8.1.2=h7f8727e_1
- regex=2022.7.9=py38h5eee18b_0
- requests=2.28.1=py38h06a4308_0
- requests-oauthlib=1.3.0=py_0
- rsa=4.7.2=pyhd3eb1b0_1
- s2n=1.0.10=h9b69904_0
- sacremoses=0.0.43=pyhd3eb1b0_0
- scikit-image=0.19.2=py38h51133e4_0
- scikit-learn=1.0.2=py38h51133e4_1
- scipy=1.9.1=py38h14f4228_0
- seaborn=0.11.2=pyhd3eb1b0_0
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=58.0.4=py38h06a4308_0
- shellingham=1.3.1=pyhd3eb1b0_0
- sip=4.19.13=py38h295c915_0
- six=1.16.0=pyhd3eb1b0_1
- smart_open=5.2.1=py38h06a4308_0
- snappy=1.1.9=h295c915_0
- sniffio=1.2.0=py38h06a4308_1
- sortedcontainers=2.4.0=pyhd3eb1b0_0
- soupsieve=2.3.1=pyhd3eb1b0_0
- spacy-legacy=3.0.9=py38h06a4308_0
- sqlite=3.39.2=h5082296_0
- stack_data=0.2.0=pyhd3eb1b0_0
- tbb=2021.5.0=hd09550d_0
- tblib=1.7.0=pyhd3eb1b0_0
- tensorboard=2.9.0=py38h06a4308_0
- tensorboard-data-server=0.6.0=py38hca6d32c_0
- tensorboard-plugin-wit=1.8.1=py38h06a4308_0
- terminado=0.13.1=py38h06a4308_0
- testpath=0.6.0=py38h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tifffile=2021.7.2=pyhd3eb1b0_2
- tk=8.6.12=h1ccaba5_0
- tokenizers=0.11.4=py38h3dcd8bd_1
- toml=0.10.2=pyhd3eb1b0_0
- toolz=0.11.2=pyhd3eb1b0_0
- torchaudio=0.9.1=py38
- torchmetrics=0.9.3=pyhd8ed1ab_0
- torchvision=0.2.2=py_3
- tornado=6.1=py38h27cfd23_0
- tqdm=4.64.0=py38h06a4308_0
- traitlets=5.1.1=pyhd3eb1b0_0
- transformers=4.18.0=py38h06a4308_0
- tsnecuda=3.0.1=cuda111py38hea5b773_1
- typing-extensions=4.3.0=py38h06a4308_0
- typing_extensions=4.3.0=py38h06a4308_0
- umap-learn=0.5.3=py38h578d9bd_0
- urllib3=1.26.11=py38h06a4308_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- webencodings=0.5.1=py38_1
- websocket-client=0.58.0=py38h06a4308_4
- werkzeug=2.0.3=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- widgetsnbextension=3.5.2=py38h06a4308_0
- xarray=0.20.1=pyhd3eb1b0_1
- xz=5.2.5=h7f8727e_1
- yacs=0.1.6=pyhd3eb1b0_1
- yaml=0.2.5=h7b6447c_0
- yarl=1.6.3=py38h27cfd23_0
- zeromq=4.3.4=h2531618_0
- zfp=0.5.5=h295c915_6
- zict=2.1.0=py38h06a4308_0
- zipp=3.8.0=py38h06a4308_0
- zlib=1.2.12=h7f8727e_2
- zlib-ng=2.0.6=h166bdaf_0
- zstd=1.5.2=ha4553b6_0
- pip:
- blis==0.7.8
- catalogue==2.0.8
- cmake==3.24.0
- coloredlogs==15.0.1
- dill==0.3.5.1
- gin-config==0.5.0
- h5py==3.1.0
- humanfriendly==10.0
- iniconfig==1.1.1
- leveldb==0.201
- multiprocess==0.70.13
- negspacy==1.0.3
- nltk==3.7
- nopdb==0.2.0
- pathos==0.2.7
- pathy==0.6.2
- pluggy==0.13.1
- pox==0.3.1
- ppft==1.7.6.5
- py==1.11.0
- pydantic==1.9.2
- pytest==6.2.3
- quickumls==1.4.0.post1
- quickumls-simstring==1.1.5.post1
- spacy==3.4.1
- spacy-loggers==1.0.3
- srsly==2.4.4
- thinc==8.1.0
- torchinfo==1.7.1
- typer==0.4.2
- unidecode==1.3.4
- unqlite==0.9.3
- wasabi==0.10.1