update compare method to call WeSME utility script

src/dialect/utils/compare.py

@@ -4,6 +4,7 @@
 from dialect.utils.fishers import run_fishers_exact_analysis
 from dialect.utils.discover import run_discover_analysis
 from dialect.utils.megsa import run_megsa_analysis
+from dialect.utils.wesme import run_wesme_analysis
 
 
 # ---------------------------------------------------------------------------- #
@@ -64,11 +65,14 @@ def run_comparison_methods(cnt_mtx, bmr_pmfs, out, k):
     logging.info("Running MEGSA...")
     megsa_df = run_megsa_analysis(cnt_df, interactions)
 
-    # TODO: Implement WeSME/WeSCO Analysis
+    logging.info("Running WeSME/WeSCO...")
+    wesme_df = run_wesme_analysis(cnt_df, out, interactions)
+
     # TODO: Implement SELECT Analysis
 
     merged_df = pd.merge(fisher_df, discover_df, on=["Gene A", "Gene B"], how="inner")
     merged_df = pd.merge(merged_df, megsa_df, on=["Gene A", "Gene B"], how="inner")
+    merged_df = pd.merge(merged_df, wesme_df, on=["Gene A", "Gene B"], how="inner")
     comparison_interaction_fout = f"{out}/comparison_interaction_results.csv"
     merged_df.to_csv(comparison_interaction_fout, index=False)
     logging.info(f"Comparison results saved to {comparison_interaction_fout}")