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uncomment line to run CBaSE to obtain BMRs CI #66: Commit 35afdd1 pushed by ashuaibi7
December 13, 2024 21:12 47s main
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December 13, 2024 21:12 47s
add method to create pairwise results plots CI #65: Commit 1820c5c pushed by ashuaibi7
December 13, 2024 17:14 39s main
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December 13, 2024 17:14 39s
add method to compute expected number of mutations based on bmr pmf f… CI #64: Commit 7b00410 pushed by ashuaibi7
December 13, 2024 16:56 40s main
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December 13, 2024 16:56 40s
modify likelihood ratio statistic computation to estimate null based … CI #63: Commit c41f45d pushed by ashuaibi7
December 13, 2024 16:47 40s main
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December 13, 2024 16:47 40s
fix mismatched parenthesis CI #62: Commit 8a7448a pushed by ashuaibi7
December 13, 2024 16:38 46s main
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December 13, 2024 16:38 46s
removed todo re. verifying bmr pmfs contain counts since this is hand… CI #61: Commit 76e1393 pushed by ashuaibi7
December 13, 2024 16:32 38s main
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December 13, 2024 16:32 38s
modified log likelihood calculation to not default bmr pmf values to … CI #60: Commit aeacfbb pushed by ashuaibi7
December 13, 2024 16:30 36s main
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December 13, 2024 16:30 36s
add tostring method to easily display interaction CI #59: Commit a8f7448 pushed by ashuaibi7
December 13, 2024 16:25 39s main
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December 13, 2024 16:25 39s
add method to compute confusion matrix between binarized counts and m… CI #58: Commit eecb81b pushed by ashuaibi7
December 13, 2024 16:21 41s main
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December 13, 2024 16:21 41s
modified log likelihood computation to remove default value of 0 when… CI #57: Commit 2481916 pushed by ashuaibi7
December 13, 2024 16:02 41s main
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December 13, 2024 16:02 41s
call methods to estimate tau parameters between top interactions when… CI #56: Commit 0517223 pushed by ashuaibi7
December 12, 2024 20:24 39s main
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December 12, 2024 20:24 39s
implemented EM from scratch for pairwise interactions CI #55: Commit fb807c1 pushed by ashuaibi7
December 12, 2024 20:23 40s main
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December 12, 2024 20:23 40s
remove return statement in em estimation for consistency CI #54: Commit ec8e9af pushed by ashuaibi7
December 12, 2024 20:00 37s main
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December 12, 2024 20:00 37s
switch scipy optimization procedure to SLSQP to handle constraints CI #53: Commit 3355616 pushed by ashuaibi7
December 12, 2024 19:24 41s main
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December 12, 2024 19:24 41s
verify bmr_pmf and counts exist by comparing to None to resolve any/a… CI #52: Commit ba02f21 pushed by ashuaibi7
December 12, 2024 19:14 46s main
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December 12, 2024 19:14 46s
add reminder to handle edge cases when pi = 0 or 1 more thoroughly CI #51: Commit ebd45fa pushed by ashuaibi7
December 12, 2024 17:16 40s main
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December 12, 2024 17:16 40s
change check on pi to see if it is None for clearer error warning whe… CI #50: Commit c0f3687 pushed by ashuaibi7
December 12, 2024 16:45 40s main
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December 12, 2024 16:45 40s
extract method to load counts and bmr pmfs and to verify input files CI #49: Commit 14401a0 pushed by ashuaibi7
December 12, 2024 16:26 48s main
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December 12, 2024 16:26 48s
ran single gene em estimation and templated out remaining code for ru… CI #48: Commit 997e7ba pushed by ashuaibi7
December 12, 2024 16:15 45s main
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December 12, 2024 16:15 45s
added necessary comments and todo statements for remaining work and c… CI #47: Commit 80774b8 pushed by ashuaibi7
December 12, 2024 16:15 40s main
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December 12, 2024 16:15 40s
improved docstrings to be in sphinx documentation format CI #46: Commit 539ce4e pushed by ashuaibi7
December 12, 2024 16:10 40s main
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December 12, 2024 16:10 40s
extracted and refactored methods to verify parameter values CI #45: Commit de148ad pushed by ashuaibi7
December 12, 2024 16:06 45s main
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December 12, 2024 16:06 45s
added template code for methods to be implemented CI #44: Commit 87c1867 pushed by ashuaibi7
December 12, 2024 15:44 37s main
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December 12, 2024 15:44 37s
call methods by passing in pi instead of using class variable pi CI #43: Commit 98667e2 pushed by ashuaibi7
December 12, 2024 15:41 52s main
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December 12, 2024 15:41 52s
include gene and sample names in final bmr pmf and count matrix files CI #42: Commit da65a53 pushed by ashuaibi7
December 12, 2024 15:23 40s main
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December 12, 2024 15:23 40s