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Merge branch 'hotfix/contingency-table' CI #282: Commit 4f92020 pushed by ashuaibi7
January 24, 2025 21:39 12s main
main
January 24, 2025 21:39 12s
fix: set default DISCOVER fdr method to BH CI #281: Commit 2b999f2 pushed by ashuaibi7
January 24, 2025 21:22 13s main
main
January 24, 2025 21:22 13s
fix: update decoy gene generation script and files CI #280: Commit 2fa8130 pushed by ashuaibi7
January 23, 2025 14:41 14s hotfix/decoy-gene-generation
hotfix/decoy-gene-generation
January 23, 2025 14:41 14s
fix: update decoy gene generation script and files CI #279: Commit 2fa8130 pushed by ashuaibi7
January 23, 2025 14:37 22s main
main
January 23, 2025 14:37 22s
create plot of dialect epsilon threshold vs. cohort size CI #278: Commit b75f901 pushed by ashuaibi7
January 22, 2025 21:21 11s main
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January 22, 2025 21:21 11s
fix: uncomment code to run other plots CI #277: Commit 9d14be3 pushed by ashuaibi7
January 22, 2025 18:42 10s main
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January 22, 2025 18:42 10s
feature: run comparison methods on gene level CI #276: Commit 0a7401d pushed by ashuaibi7
January 22, 2025 18:09 12s main
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January 22, 2025 18:09 12s
format line wrap CI #275: Commit ce77b53 pushed by ashuaibi7
January 22, 2025 16:32 11s main
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January 22, 2025 16:32 11s
fix: update file i/o CI #274: Commit 0521e7b pushed by ashuaibi7
January 22, 2025 14:18 11s main
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January 22, 2025 14:18 11s
fix: update DIALECT epsilon threshold computation CI #273: Commit 01e694a pushed by ashuaibi7
January 22, 2025 13:00 14s main
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January 22, 2025 13:00 14s
made formatting changes CI #272: Commit abe74b1 pushed by ashuaibi7
January 21, 2025 21:43 15s main
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January 21, 2025 21:43 15s
added call to plotting function to generate plots for all subtypes CI #271: Commit c4dc6fc pushed by ashuaibi7
January 21, 2025 21:09 15s main
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January 21, 2025 21:09 15s
added plotting function to highlight mutation count difference betwee… CI #270: Commit 04fd870 pushed by ashuaibi7
January 21, 2025 21:09 15s main
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January 21, 2025 21:09 15s
resolved underflow to nan issue when computing total probability and … CI #269: Commit 51ec207 pushed by ashuaibi7
January 21, 2025 12:43 13s main
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January 21, 2025 12:43 13s
made formatting changes CI #268: Commit aee2f88 pushed by ashuaibi7
January 20, 2025 20:22 11s main
main
January 20, 2025 20:22 11s
modified cbase analysis to generate upset plot of highly ranked likel… CI #267: Commit fee4b66 pushed by ashuaibi7
January 20, 2025 19:31 10s main
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January 20, 2025 19:31 10s
created plotting function to generate upset plot of high ranked likel… CI #266: Commit cf795ba pushed by ashuaibi7
January 20, 2025 19:30 10s main
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January 20, 2025 19:30 10s
created script to call and create cbase decoy gene fraction bar plot CI #265: Commit 5229e3e pushed by ashuaibi7
January 20, 2025 18:59 14s main
main
January 20, 2025 18:59 14s
added plot to visualize fraction of top ranked cbase genes that are h… CI #264: Commit ea8253f pushed by ashuaibi7
January 20, 2025 18:56 14s main
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January 20, 2025 18:56 14s
modified calls to pass in threshold to generate script and use argume… CI #263: Commit 5cba9c0 pushed by ashuaibi7
January 20, 2025 17:14 11s main
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January 20, 2025 17:14 11s
modified argument parser for generate command to accept threshold arg… CI #262: Commit 195d400 pushed by ashuaibi7
January 20, 2025 17:13 11s main
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January 20, 2025 17:13 11s
modified generation with cbase to pass in a threshold to q values scr… CI #261: Commit 7bc5cb5 pushed by ashuaibi7
January 20, 2025 17:11 15s main
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January 20, 2025 17:11 15s
auto formatted with black and added argument for threshold in generat… CI #260: Commit 8aac25b pushed by ashuaibi7
January 20, 2025 17:09 11s main
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January 20, 2025 17:09 11s
modified identify script to track and save cbase p values for each ge… CI #259: Commit af2683f pushed by ashuaibi7
January 20, 2025 15:15 11s main
main
January 20, 2025 15:15 11s
added instance variable for cbase p value to track in results tables CI #258: Commit cb6353c pushed by ashuaibi7
January 20, 2025 15:14 14s main
main
January 20, 2025 15:14 14s