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DESCRIPTION
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DESCRIPTION
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Package: quincunx
Type: Package
Title: REST API Client for the 'PGS' Catalog
Version: 0.1.7
Authors@R: c(
person(given = "Ramiro", family = "Magno",
email = "rmagno@pattern.institute",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-5226-3441")),
person(given = "Isabel", family = "Duarte",
email = "iduarte.scientist@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0003-0060-2936")),
person(given = "Ana-Teresa", family = "Maia",
email = "maia.anateresa@gmail.com", role = "aut",
comment = c(ORCID = "0000-0002-0454-9207")),
person("CINTESIS", role = c("cph", "fnd")),
person("Pattern Institute", role = c("cph", "fnd"))
)
Description: Programmatic access to the 'PGS' Catalog.
This package provides easy access to 'PGS' Catalog data by
accessing the REST API <https://www.pgscatalog.org/rest/>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Suggests:
testthat,
knitr,
rmarkdown,
ggplot2
Imports:
stringr,
magrittr,
vroom,
purrr,
glue,
dplyr,
tidyjson,
tibble,
lubridate,
rlang,
tidyr,
httr,
utils,
rvest,
progress,
methods,
writexl,
concatenate,
memoise
Collate:
'ancestry_categories.R'
'class-cohorts.R'
'class-performance_metrics.R'
'class-publications.R'
'class-releases.R'
'class-sample_sets.R'
'class-scores.R'
'class-trait_categories.R'
'class-traits.R'
'clear_cache.R'
'contains_question_mark.R'
'count.R'
'drop_metadata_cols.R'
'first_non_na.R'
'generics.R'
'get.R'
'get_ancestry_categories.R'
'get_cohorts.R'
'get_column.R'
'get_performance_metrics.R'
'get_publications.R'
'get_releases.R'
'get_sample_sets.R'
'get_scores.R'
'get_trait_categories.R'
'get_traits.R'
'id_mapping.R'
'is_json_empty.R'
'is_paginated.R'
'is_pgs_id.R'
'is_pubmed_id.R'
'messages.R'
'n_pages.R'
'nr_to_na.R'
'offsets.R'
'open_in_dbsnp.R'
'open_in_pgs_catalog.R'
'open_in_pubmed.R'
'parse-ancestry_categories.R'
'parse-cohorts.R'
'parse-performance_metrics.R'
'parse-publications.R'
'parse-releases.R'
'parse-sample_sets.R'
'parse-scores.R'
'parse-trait_categories.R'
'parse-traits.R'
'read_file_column_names.R'
'read_pgs_scoring_file.R'
'relocate_metadata_cols.R'
'remap_id.R'
'request.R'
's4-utils.R'
'stages.R'
'sure.R'
'unwrap_cohort.R'
'unwrap_demographics.R'
'unwrap_efotrait.R'
'unwrap_interval.R'
'unwrap_publication.R'
'unwrap_sample.R'
'utils-pipe.R'
'warnings.R'
'write_xlsx.R'
Depends:
R (>= 2.10)
URL: https://github.com/ramiromagno/quincunx, https://rmagno.eu/quincunx/
BugReports: https://github.com/ramiromagno/quincunx/issues
Roxygen: list(markdown = TRUE)