Add test for pulling

rabix · Sep 17, 2020 · 9ef7a18 · 9ef7a18
1 parent f9a2cea
commit 9ef7a18
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diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -29,6 +29,9 @@ jobs:
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
+      env:
+        SB_AUTH_TOKEN: ${{ secrets.API_KEY }}
+        SB_API_ENDPOINT: https://api.sbgenomics.com/v2
       run: |
         pip install pytest
         cd tests

diff --git a/tests/test_pulling.py b/tests/test_pulling.py
@@ -0,0 +1,13 @@
+import subprocess
+import pathlib
+import tempfile
+
+
+def test_pull():
+
+    with tempfile.TemporaryDirectory() as td:
+        out_dir = pathlib.Path(td)
+        subprocess.run(["sbpull", "--unpack", ".", "admin/sbg-public-data/eqtl-analysis-with-fastqtl-gtex-v7/", str(out_dir / "eqtl.cwl")], check=True)
+
+        assert (out_dir / "eqtl.cwl").exists()
+        assert (out_dir / "eqtl.cwl.steps").exists()