De Bruijn Graph

Reconstruction via de Bruijn Graph of a sequence from reads in FASTA/FASTQ format.

Documentation

To get the documentation for this project, first install Sphinx:

pip install sphinx

Or alternatively via Conda:

conda install sphinx

More info on installing Sphinx here.

After installing successfully Sphinx, move into the directory docs/source and run:

make html

If you wish, it's also possible to make documentation via LaTeX into a PDF:

make latexpdf

However for this you must have LaTeX installed, more info here.

---

2023, Chiara Pagliaroli & Riccardo Chimisso