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Use Blast for template selection #142

Merged
merged 23 commits into from
Aug 19, 2024
Merged

Use Blast for template selection #142

merged 23 commits into from
Aug 19, 2024

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AntonPetrov
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@AntonPetrov AntonPetrov commented Aug 13, 2024

  • Use --1blast ribotyper option to search for templates using NCBI blast instead of Infernal. This method is used for all models except for Rfam.
  • Template free mode using RNArtist templates

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github-actions bot commented Aug 13, 2024

Docker image tag(s) pushed:

rnacentral/r2dt:pr-142

Labels added to images:

org.opencontainers.image.created=2024-08-19T08:45:14.241Z
org.opencontainers.image.description=Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
org.opencontainers.image.licenses=Apache-2.0
org.opencontainers.image.revision=7116adbac8f4310e89c500b2e01580352d6c3190
org.opencontainers.image.source=https://github.com/RNAcentral/R2DT
org.opencontainers.image.title=R2DT
org.opencontainers.image.url=https://github.com/RNAcentral/R2DT
org.opencontainers.image.version=pr-142

@AntonPetrov AntonPetrov marked this pull request as ready for review August 19, 2024 08:46
@AntonPetrov AntonPetrov merged commit 561db40 into develop Aug 19, 2024
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@AntonPetrov AntonPetrov deleted the r2dt-blast branch August 19, 2024 08:46
@AntonPetrov AntonPetrov mentioned this pull request Aug 19, 2024
@AntonPetrov AntonPetrov mentioned this pull request Aug 27, 2024
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