IQTreeOctoJob

# /bin/sh
# ----------------Parameters---------------------- #
#$ -S /bin/sh
#$ -pe mthread 24
#$  -q uThC.q -l lopri
#$ -l mres=72G,h_data=3G,h_vmem=3G
#$ -cwd
#$ -j y
#$ -N iqtree.may23.v2.60p
#$ -o iqtree.may23.v2.60p.log
#$ -m bea
#$ -M quattrinia@si.edu
#
# ----------------Modules------------------------- #
module load bioinformatics/iqtree
#
# ----------------Your Commands------------------- #
#
echo + `date` job $JOB_NAME started in $QUEUE with jobID=$JOB_ID on $HOSTNAME
echo + NSLOTS = $NSLOTS
#
iqtree2 -s /scratch/nmnh_corals/quattrinia/analysis/UCE/octos_tree_may23/taxon-sets/all/mafft-nexus-internal-trimmed-final-gblocks-clean-v2-60p-raxml/mafft-nexus-internal-trimmed-final-gblocks-clean-v2-60p-raxml.phylip  -p /scratch/nmnh_corals/quattrinia/analysis/UCE/octos_tree_may23/taxon-sets/all/mafft-nexus-internal-trimmed-final-gblocks-clean-v2-60p-raxml/mafft-nexus-internal-trimmed-final-gblocks-clean-v2-60p-raxml.charsets -m TESTMERGE -pre may23.final.v2.60p -rcluster 10 -bb 1000 -T $NSLOTS -alrt 1000
#
echo = `date` job $JOB_NAME done