-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathNAMESPACE
executable file
·113 lines (112 loc) · 2.69 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
# Generated by roxygen2: do not edit by hand
export(TACC)
export(create_rules)
export(do_extract)
export(do_extract_old)
export(do_extract_ref)
export(do_plot)
export(do_plot_compare)
export(looic)
export(lsdSave)
export(parse_model_code)
export(plot_F)
export(plot_aw_cpue_lm)
export(plot_biomass)
export(plot_catch)
export(plot_catch_rule)
export(plot_catch_save)
export(plot_compare_cpue)
export(plot_compare_lfs)
export(plot_compare_q)
export(plot_compare_recruitment)
export(plot_compare_selectivity)
export(plot_compare_ssb)
export(plot_compare_vb)
export(plot_cpue)
export(plot_data_extent)
export(plot_dens)
export(plot_growth_increment)
export(plot_growth_matrix)
export(plot_handling_mortality)
export(plot_initial_numbers)
export(plot_lfs)
export(plot_lfs_resid)
export(plot_lfs_resid2)
export(plot_maturation)
export(plot_mls)
export(plot_money_biomass)
export(plot_money_vuln_biomass)
export(plot_movement)
export(plot_mp_rules)
export(plot_numbers)
export(plot_offset_cpue)
export(plot_offset_cpue_lm)
export(plot_proj_numbers)
export(plot_puerulus)
export(plot_q)
export(plot_recruitment)
export(plot_recruitment_deviations)
export(plot_recruitment_size)
export(plot_refpoints)
export(plot_retro)
export(plot_rules)
export(plot_selectivity)
export(plot_sex_ratio)
export(plot_snail)
export(plot_ssb)
export(plot_ssb_AW_proj)
export(plot_ssb_recruitment)
export(plot_surplus_production)
export(plot_tag_residuals)
export(plot_total_biomass)
export(plot_vulnerable_biomass)
export(plot_vulnerable_reference_biomass)
export(plot_vulnref_AW)
export(plot_vulnref_AW_proj)
export(plot_vulnref_rel)
export(read_SSB)
export(read_catch)
export(read_stan_map)
export(read_stan_mcmc)
export(read_stan_var)
export(table_compare_parameters)
export(table_compare_residuals)
export(table_parameters)
export(table_residuals)
export(theme_lsd)
exportClasses(lsdOutput)
exportMethods(extract)
exportMethods(initialize)
exportMethods(show)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(ggthemes)
import(loo)
import(methods)
import(rstan)
import(utils)
importClassesFrom(rstan,stanfit)
importFrom(RColorBrewer,brewer.pal)
importFrom(forcats,fct_rev)
importFrom(ggrepel,geom_text_repel)
importFrom(ggridges,geom_density_ridges)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,gray)
importFrom(grDevices,hcl)
importFrom(parallel,detectCores)
importFrom(plyr,adply)
importFrom(reshape2,melt)
importFrom(rstan,read_rdump)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,spread)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)
importMethodsFrom(rstan,extract)