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circ_finder

This Python package was bulit to identify potential circular RNAs in bulk RNA-seq data.

The following commands were included in the package:

Top level parser: circRNA parsing and seed match

seed_extract: extracting seed sequences from miRNAs

parse: parsing back-splicing junctions

reannotate: reannotate circRNAs

filter_junctions: filtering junctions

extract exonic sequences and seed matching: seed matching for selected circRNAs

find conserved junctions between species: detecting conserved junctions between speicies

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