created coveragerc

qiyunlab · May 1, 2020 · c08479e · c08479e
1 parent e7b8cc7
commit c08479e
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Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/.coveragerc b/.coveragerc
@@ -0,0 +1,4 @@
+[run]
+omit =
+    */tests/*
+    */__init__.py
diff --git a/hgtector/database.py b/hgtector/database.py
@@ -750,7 +750,7 @@ def build_blast_db(self):
                    join(self.output, 'blast', 'db'),
                    join(self.output, 'taxon.map')))
         print('Build BLAST database...', flush=True)
-        ec, out = run_command(cmd, capture=False, merge=False)
+        ec, out = run_command(cmd)
         if ec:
             raise ValueError('makeblastdb failed with error code {}.'
                              .format(ec))
@@ -775,7 +775,7 @@ def build_diamond_db(self):
                    join(self.output, 'taxdump', 'names.dmp'),
                    join(self.output, 'diamond', 'db'), self.tmpdir))
         print('Build DIAMOND database...', flush=True)
-        ec, out = run_command(cmd, capture=False, merge=False)
+        ec, out = run_command(cmd)
         if ec:
             raise ValueError('diamond failed with error code {}.'.format(ec))