Skip to content

Commit

Permalink
Built site for gh-pages
Browse files Browse the repository at this point in the history
  • Loading branch information
TomMonks committed May 13, 2024
1 parent 07f8b03 commit 2b3bca5
Show file tree
Hide file tree
Showing 8 changed files with 1,027 additions and 146 deletions.
2 changes: 1 addition & 1 deletion .nojekyll
Original file line number Diff line number Diff line change
@@ -1 +1 @@
0fb610bc
9af601b4
16 changes: 11 additions & 5 deletions 02_model/01_model.html
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@

<meta name="author" content="Thomas Monks, Alison Harper">

<title>S.T.A.R.S - Treatment Sim: an R simmer implementation</title>
<title>S.T.A.R.S - Model code</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand Down Expand Up @@ -108,7 +108,7 @@
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar,#quarto-sidebar-glass" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../02_model/01_model.html"><code>simmer</code> code</a></li><li class="breadcrumb-item"><a href="../02_model/01_model.html">Treatment Sim: an R <code>simmer</code> implementation</a></li></ol></nav>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../02_model/01_model.html"><code>simmer</code> code</a></li><li class="breadcrumb-item"><a href="../02_model/01_model.html">Model code</a></li></ol></nav>
<a class="flex-grow-1" role="button" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar,#quarto-sidebar-glass" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="" onclick="window.quartoOpenSearch();">
Expand Down Expand Up @@ -179,13 +179,19 @@
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../02_model/01_model.html" class="sidebar-item-text sidebar-link active">
<span class="menu-text">Treatment Sim: an R <code>simmer</code> implementation</span></a>
<span class="menu-text">Model code</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../02_model/02_thinning.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Simulating time-dependent arrivals using thinning</span></a>
<span class="menu-text">Time-dependent arrivals</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="../02_model/03_r_sampling.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Sampling in R</span></a>
</div>
</li>
</ul>
Expand Down Expand Up @@ -227,7 +233,7 @@ <h2 id="toc-title">On this page</h2>

<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">Treatment Sim: an R <code>simmer</code> implementation</h1>
<h1 class="title">Model code</h1>
</div>


Expand Down
145 changes: 78 additions & 67 deletions 02_model/02_thinning.html

Large diffs are not rendered by default.

792 changes: 792 additions & 0 deletions 02_model/03_r_sampling.html

Large diffs are not rendered by default.

10 changes: 8 additions & 2 deletions index.html
Original file line number Diff line number Diff line change
Expand Up @@ -151,13 +151,19 @@
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/01_model.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Treatment Sim: an R <code>simmer</code> implementation</span></a>
<span class="menu-text">Model code</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/02_thinning.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Simulating time-dependent arrivals using thinning</span></a>
<span class="menu-text">Time-dependent arrivals</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/03_r_sampling.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Sampling in R</span></a>
</div>
</li>
</ul>
Expand Down
16 changes: 11 additions & 5 deletions preface.html
Original file line number Diff line number Diff line change
Expand Up @@ -144,13 +144,19 @@
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/01_model.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Treatment Sim: an R <code>simmer</code> implementation</span></a>
<span class="menu-text">Model code</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/02_thinning.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Simulating time-dependent arrivals using thinning</span></a>
<span class="menu-text">Time-dependent arrivals</span></a>
</div>
</li>
<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./02_model/03_r_sampling.html" class="sidebar-item-text sidebar-link">
<span class="menu-text">Sampling in R</span></a>
</div>
</li>
</ul>
Expand All @@ -165,7 +171,7 @@
<h2 id="toc-title">On this page</h2>

<ul>
<li><a href="#towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-examplar" id="toc-towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-examplar" class="nav-link active" data-scroll-target="#towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-examplar">💫 Towards Sharing Tools, Artifacts, and Reproducible Simulation: a <code>simmer</code> model examplar</a></li>
<li><a href="#towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-example" id="toc-towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-example" class="nav-link active" data-scroll-target="#towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-example">💫 Towards Sharing Tools, Artifacts, and Reproducible Simulation: a <code>simmer</code> model example</a></li>
</ul>
<div class="toc-actions"><div><i class="bi bi-github"></i></div><div class="action-links"><p><a href="https://github.com/TomMonks/treat-sim-rsimmer/edit/main/preface.qmd" class="toc-action">Edit this page</a></p><p><a href="https://github.com/TomMonks/treat-sim-rsimmer/issues/new" class="toc-action">Report an issue</a></p></div></div></nav>
</div>
Expand All @@ -189,8 +195,8 @@ <h1 class="title">Abstract</h1>

</header>

<section id="towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-examplar" class="level2">
<h2 class="anchored" data-anchor-id="towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-examplar">💫 Towards Sharing Tools, Artifacts, and Reproducible Simulation: a <code>simmer</code> model examplar</h2>
<section id="towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-example" class="level2">
<h2 class="anchored" data-anchor-id="towards-sharing-tools-artifacts-and-reproducible-simulation-a-simmer-model-example">💫 Towards Sharing Tools, Artifacts, and Reproducible Simulation: a <code>simmer</code> model example</h2>
<p><a href="https://orcid.org/0000-0001-5274-5037"><img src="https://img.shields.io/badge/ORCID-0000--0001--5274--5037-brightgreen.png" class="img-fluid" alt="ORCID: Harper"></a> <a href="https://orcid.org/0000-0003-2631-4481"><img src="https://img.shields.io/badge/ORCID-0000--0003--2631--4481-brightgreen.png" class="img-fluid" alt="ORCID: Monks"></a> <a href="https://orcid.org/0000-0002-6596-3479"><img src="https://img.shields.io/badge/ORCID-0000--0002--6596--3479-brightgreen.png" class="img-fluid" alt="ORCID: Heather"></a> <a href="https://orcid.org/0000-0002-2204-8924"><img src="https://img.shields.io/badge/ORCID-0000--0002--2204--8924-brightgreen.png" class="img-fluid" alt="ORCID: Mustafee"></a></p>
<p>The materials and methods in this documentation support work towards developing the <strong>S.T.A.R.S healthcare framework</strong> (<strong>S</strong>haring <strong>T</strong>ools and <strong>A</strong>rtifacts for <strong>R</strong>eproducible <strong>S</strong>imulations in healthcare). Long term S.T.A.R.S aims to support researchers share open simulation models regardless of language choice, improve the quality of sharing, and reduce the workload required to meet high standards of open science for the modelling and simulation community.</p>
<p>The code and written materials are a <strong>work in progress</strong> towards STARS version 2.0. It demonstrates the application od sharing a discrete-event simuilation model and associated research artifacts:</p>
Expand Down
Loading

0 comments on commit 2b3bca5

Please sign in to comment.