diff --git a/reproduction/docker/Dockerfile b/reproduction/docker/Dockerfile index 6621045..1563050 100644 --- a/reproduction/docker/Dockerfile +++ b/reproduction/docker/Dockerfile @@ -6,6 +6,7 @@ FROM continuumio/miniconda3:latest # Create and set the working directory to the container make copy simpler RUN mkdir /home/code +RUN mkdir /home/original_study WORKDIR /home/code # Copy all files across to container @@ -14,6 +15,13 @@ COPY ./reproduction /home/code # Copy jupyter config file COPY ./reproduction/docker/jupyter_notebook_config.py /root/.jupyter/jupyter_notebook_config.py +# Copy the files from original_study/ required for comparisons +COPY ./original_study/supp_tab2_reformat.csv /home/original_study/supp_tab2_reformat.csv +COPY ./original_study/supp_tab3_reformat.csv /home/original_study/supp_tab3_reformat.csv +COPY ./original_study/supp_tab4_reformat.csv /home/original_study/supp_tab4_reformat.csv +COPY ./original_study/supp_tab5_reformat.csv /home/original_study/supp_tab5_reformat.csv +COPY ./original_study/supp_tab6_reformat.csv /home/original_study/supp_tab6_reformat.csv + # Install anaconda, conda-forge and pip dependencies RUN conda update conda && conda env create -f environment.yaml && conda clean -afy