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build(docker): add required original_study .csv to container
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amyheather committed Jul 29, 2024
1 parent fd2b420 commit a0612be
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8 changes: 8 additions & 0 deletions reproduction/docker/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@ FROM continuumio/miniconda3:latest

# Create and set the working directory to the container make copy simpler
RUN mkdir /home/code
RUN mkdir /home/original_study
WORKDIR /home/code

# Copy all files across to container
Expand All @@ -14,6 +15,13 @@ COPY ./reproduction /home/code
# Copy jupyter config file
COPY ./reproduction/docker/jupyter_notebook_config.py /root/.jupyter/jupyter_notebook_config.py

# Copy the files from original_study/ required for comparisons
COPY ./original_study/supp_tab2_reformat.csv /home/original_study/supp_tab2_reformat.csv
COPY ./original_study/supp_tab3_reformat.csv /home/original_study/supp_tab3_reformat.csv
COPY ./original_study/supp_tab4_reformat.csv /home/original_study/supp_tab4_reformat.csv
COPY ./original_study/supp_tab5_reformat.csv /home/original_study/supp_tab5_reformat.csv
COPY ./original_study/supp_tab6_reformat.csv /home/original_study/supp_tab6_reformat.csv

# Install anaconda, conda-forge and pip dependencies
RUN conda update conda && conda env create -f environment.yaml && conda clean -afy

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