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-bash: $'\r': command not found
-bash: $'\r': command not found
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,
28141801,
28300969,
28138046,
28221118,
27927858,
28352293,
27914834,
27780498,
27812211,
27798305,
27551005,
27454521,
27645785,
27487084,
27716170,
27205899,
27141082,
27113476,
27088272,
27453682,
26733693
1. Nat Rev Microbiol. 2017 Aug;15(8):502-510. doi: 10.1038/nrmicro.2017.45. Epub
2017 May 30.
Pathways to zoonotic spillover.
Plowright RK(1), Parrish CR(2), McCallum H(3), Hudson PJ(4), Ko AI(5), Graham
AL(6), Lloyd-Smith JO(7).
Author information:
(1)Department of Microbiology and Immunology, Montana State University, Bozeman,
Montana 59717, USA.
(2)Baker Institute for Animal Health, College of Veterinary Medicine, Cornell
University, Ithaca, New York 14853, USA.
(3)Griffith School of Environment, Griffith University, Brisbane, Queensland
4111, Australia.
(4)Center for Infectious Disease Dynamics, Pennsylvania State University, State
College, Pennsylvania 16802, USA.
(5)Department of Epidemiology of Microbial Diseases, Yale School of Public
Health, New Haven, Connecticut 06520-8034, USA.
(6)Department of Ecology &Evolutionary Biology, Princeton University, Princeton,
New Jersey 08544, USA.
(7)Department of Ecology &Evolutionary Biology, University of California, Los
Angeles, Los Angeles, California 90095-7239, USA; and at Fogarty International
Center, National Institutes of Health, Bethesda, Maryland 20892-2220, USA.
Zoonotic spillover, which is the transmission of a pathogen from a vertebrate
animal to a human, presents a global public health burden but is a poorly
understood phenomenon. Zoonotic spillover requires several factors to align,
including the ecological, epidemiological and behavioural determinants of
pathogen exposure, and the within-human factors that affect susceptibility to
infection. In this Opinion article, we propose a synthetic framework for
animal-to-human transmission that integrates the relevant mechanisms. This
framework reveals that all zoonotic pathogens must overcome a hierarchical serie s
of barriers to cause spillover infections in humans. Understanding how these
barriers are functionally and quantitatively linked, and how they interact in
space and time, will substantially improve our ability to predict or prevent
spillover events. This work provides a foundation for transdisciplinary
investigation of spillover and synthetic theory on zoonotic transmission.
DOI: 10.1038/nrmicro.2017.45
PMCID: PMC5791534
PMID: 28555073 [Indexed for MEDLINE]
kn338@KN338-WIN7 ~
$ 28291747,
-bash: 28291747,: command not found
kn338@KN338-WIN7 ~
$ 28141801,
-bash: 28141801,: command not found
kn338@KN338-WIN7 ~
$ 28300969,
-bash: 28300969,: command not found
kn338@KN338-WIN7 ~
$ 28138046,
-bash: 28138046,: command not found
kn338@KN338-WIN7 ~
$ 28221118,
-bash: 28221118,: command not found
kn338@KN338-WIN7 ~
$ 27927858,
-bash: 27927858,: command not found
kn338@KN338-WIN7 ~
$ 28352293,
-bash: 28352293,: command not found
kn338@KN338-WIN7 ~
$ 27914834,
-bash: 27914834,: command not found
kn338@KN338-WIN7 ~
$ 27780498,
-bash: 27780498,: command not found
kn338@KN338-WIN7 ~
$ 27812211,
-bash: 27812211,: command not found
kn338@KN338-WIN7 ~
$ 27798305,
-bash: 27798305,: command not found
kn338@KN338-WIN7 ~
$ 27551005,
-bash: 27551005,: command not found
kn338@KN338-WIN7 ~
$ 27454521,
-bash: 27454521,: command not found
kn338@KN338-WIN7 ~
$ 27645785,
-bash: 27645785,: command not found
kn338@KN338-WIN7 ~
$ 27487084,
-bash: 27487084,: command not found
kn338@KN338-WIN7 ~
$ 27716170,
-bash: 27716170,: command not found
kn338@KN338-WIN7 ~
$ 27205899,
-bash: 27205899,: command not found
kn338@KN338-WIN7 ~
$ 27141082,
-bash: 27141082,: command not found
kn338@KN338-WIN7 ~
$ 27113476,
-bash: 27113476,: command not found
kn338@KN338-WIN7 ~
$ 27088272,
-bash: 27088272,: command not found
kn338@KN338-WIN7 ~
$ 27453682,
-bash: 27453682,: command not found
kn338@KN338-WIN7 ~
$ 26733693
-bash: 26733693: command not found
kn338@KN338-WIN7 ~
$ efetch -dp pubmed -id 28555073,\
> 28291747,\
> 28141801,\
> 28300969,\
> 28138046,\
> 28221118,\
> 27927858,\
> 28352293,\
> 27914834,\
> 27780498,\
> 27812211,\
> 27798305,\
> 27551005,\
> 27454521,\
> 27645785,\
> 27487084,\
> 27716170,\
> 27205899,\
> 27141082,\
> 27113476,\
> 27088272,\
> 27453682,\
> 26733693 -format xml |\
> xtract -pattern PubmedArticle -element ArticleTitle
Unknown option: dp
Format Selection
-format Format of record or report
-mode text, xml, asn.1, json
-style withparts, conwithfeat
Direct Record Selection
-db Database name
-id Unique identifier or accession number
Sequence Range
-seq_start First sequence position to retrieve
-seq_stop Last sequence position to retrieve
-strand Strand of DNA to retrieve
Gene Range
-chr_start Sequence range from 0-based coordinates
-chr_stop in gene docsum GenomicInfoType object
Sequence Flags
-complexity 0 = default, 1 = bioseq, 3 = nuc-prot set
-extend Extend sequence retrieval in both directions
-extrafeat Bit flag specifying extra features
Miscellaneous
-raw Skip database-specific XML modifications
Format Examples
-db -format -mode Report Type
___ _______ _____ ___________
(all)
docsum DocumentSummarySet XML
docsum json DocumentSummarySet JSON
full Same as native except for mesh
uid Unique Identifier List
url Entrez URL
xml Same as -format full -mode xml
bioproject
native BioProject Report
native xml RecordSet XML
biosample
native BioSample Report
native xml BioSampleSet XML
biosystems
native xml Sys-set XML
gds
native xml RecordSet XML
summary Summary
gene
gene_table Gene Table
native Gene Report
native asn.1 Entrezgene ASN.1
native xml Entrezgene-Set XML
tabular Tabular Report
homologene
alignmentscores Alignment Scores
fasta FASTA
homologene Homologene Report
native Homologene List
native asn.1 HG-Entry ASN.1
native xml Entrez-Homologene-Set XML
mesh
full Full Record
native MeSH Report
native xml RecordSet XML
nlmcatalog
native Full Record
native xml NLMCatalogRecordSet XML
pmc
medline MEDLINE
native xml pmc-articleset XML
pubmed
abstract Abstract
medline MEDLINE
native asn.1 Pubmed-entry ASN.1
native xml PubmedArticleSet XML
(sequences)
acc Accession Number
est EST Report
fasta FASTA
fasta xml TinySeq XML
fasta_cds_aa FASTA of CDS Products
fasta_cds_na FASTA of Coding Regions
ft Feature Table
gb GenBank Flatfile
gb xml GBSet XML
gbc xml INSDSet XML
gene_fasta FASTA of Gene
gp GenPept Flatfile
gp xml GBSet XML
gpc xml INSDSet XML
gss GSS Report
ipg Identical Protein Report
ipg xml IPGReportSet XML
native text Seq-entry ASN.1
native xml Bioseq-set XML
seqid Seq-id ASN.1
snp
chr Chromosome Report
docset Summary
fasta FASTA
flt Flat File
native asn.1 Rs ASN.1
native xml ExchangeSet XML
rsr RS Cluster Report
ssexemplar SS Exemplar List
sra
native xml EXPERIMENT_PACKAGE_SET XML
runinfo xml SraRunInfo XML
structure
mmdb Ncbi-mime-asn1 strucseq ASN.1
native MMDB Report
native xml RecordSet XML
taxonomy
native Taxonomy List
native xml TaxaSet XML
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487 084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element ArticleTitle
ERROR: Unparsable XML element
Pathways to zoonotic spillover.
Crystallization of FcpA from Leptospira, a novel flagellar protein that is essential for pathogenesis.
Distinct antibody responses of patients with mild and severe leptospirosis determined by whole proteome microarray analysis.
Rat infestation associated with environmental deficiencies in an urban slum community with high risk of leptospirosis transmission.
Epidemiological Investigation of a Diarrhea Outbreak in the South Pacific Island Nation of Tuvalu During a Severe La Niña-Associated Drought Emergency in 2011.
Increase in Tuberculosis Cases among Prisoners, Brazil, 2009-20141.
Transient Hearing Loss in Adults Associated With Zika Virus Infection.
Using fine-scale spatial genetics of Norway rats to improve control efforts and reduce leptospirosis risk in urban slum environments.
Glaucoma and Congenital Zika Syndrome.
Factors affecting carriage and intensity of infection of Calodium hepaticum within Norway rats (Rattus norvegicus) from an urban slum environment in Salvador, Brazi l.
Cathelicidin Insufficiency in Patients with Fatal Leptospirosis.
Global population divergence and admixture of the brown rat (Rattus norvegicus).
Zika Virus: From Obscurity to Potentially Devastating International Threat.
Low Risk of International Zika Virus Spread due to the 2016 Olympics in Brazil.
Guillain-Barré Syndrome After Zika Virus Infection in Brazil.
An Optimized Method for Quantification of Pathogenic Leptospira in Environmental Water Samples.
Impact of mass-screening on tuberculosis incidence in a prospective cohort of Brazilian prisoners.
A Cost-Effectiveness Tool for Informing Policies on Zika Virus Control.
Real-Time PCR Reveals Rapid Dissemination of Leptospira interrogans after Intraperitoneal and Conjunctival Inoculation of Hamsters.
A novel flagellar sheath protein, FcpA, determines filament coiling, translational motility and virulence for the Leptospira spirochete.
Increased Rotavirus Prevalence in Diarrheal Outbreak Precipitated by Localized Flooding, Solomon Islands, 2014.
A Comparative Assessment of Track Plates to Quantify Fine Scale Variations in the Relative Abundance of Norway Rats in Urban Slums.
Multiple Paternity in the Norway Rat, Rattus norvegicus, from Urban Slums in Salvador, Brazil.
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,2771617 0,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element Affiliation
ERROR: Unparsable XML element
Department of Microbiology and Immunology, Montana State University, Bozeman, Montana 59717, USA. Baker Institute for Animal Health, College of Veterinary Medicine, Corn ell University, Ithaca, New York 14853, USA. Griffith School of Environment, Griffith University, Brisbane, Queensland 4111, Australia. Center for Infectious Disease D ynamics, Pennsylvania State University, State College, Pennsylvania 16802, USA. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Conn ecticut 06520-8034, USA. Department of Ecology &Evolutionary Biology, Princeton University, Princeton, New Jersey 08544, USA. Department of Ecology &Evolutionary Bio logy, University of California, Los Angeles, Los Angeles, California 90095-7239, USA; and at Fogarty International Center, National Institutes of Health, Bethesda, Maryland 20 892-2220, USA.
Laboratory of Molecular and Structural Microbiology, Institut Pasteur de Montevideo, 11400 Montevideo, Uruguay. Laboratory of Molecular and Structural Microbiology, Institut P asteur de Montevideo, 11400 Montevideo, Uruguay. Laboratory of Molecular and Structural Microbiology, Institut Pasteur de Montevideo, 11400 Montevideo, Uruguay. Departm ent of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA. Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA. Unit of Biology of Spirochetes, Department of Microbiology, Institut Pasteur, 25-28 Rue du Dr Roux, 75015 Paris, France. Laborat ory of Molecular and Structural Microbiology, Institut Pasteur de Montevideo, 11400 Montevideo, Uruguay. Laboratory of Molecular and Structural Microbiology, Institut P asteur de Montevideo, 11400 Montevideo, Uruguay.
Fiocruz, Bio-Manguinhos, Brazilian Ministry of Health, Rio de Janeiro, RJ, Brazil. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America. Antigen Discovery Inc, Irvine, CA, Unit ed States of America. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America. Department of Medicine, Division of Infectious Disease, University of California Irvine, Irvine, Califo rnia, United States of America. Department of Medicine, Division of Infectious Disease, University of California Irvine, Irvine, California, United States of America. Departm ent of Medicine, Division of Infectious Disease, University of California Irvine, Irvine, California, United States of America. Fiocruz, Gonçalo Moniz Research Institute, Braz ilian Ministry of Health, Salvador, BA, Brazil. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Institute of Collective Health, Federal University of Bahia, Salvador, BA, Brazil. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Institute of Collective Health, Federal University of Bahia, Salvador, BA, Brazil. Department of E pidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry o f Health, Salvador, BA, Brazil. Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Disease s, Yale School of Public Health, New Haven, CT, United States of America. Fiocruz, Bio-Manguinhos, Brazilian Ministry of Health, Rio de Janeiro, RJ, Brazil. Departm ent of Medicine, Division of Infectious Disease, University of California Irvine, Irvine, California, United States of America.
Escola de Medicina Veterinária, Universidade Federal da Bahia, Salvador, Brasil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health , Yale University, New Haven, U.S.A. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. Instituto de Saúde Coletiva, Universidade Federal da Ba hia, Salvador, Brasil.
Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut. Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiol ogy of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut. Tuvalu Ministry of Health, Funafuti, Tuvalu. Tuvalu Ministry of Health, Funafuti, Tu valu. World Health Organization, Suva, Fiji.
Hospital Santa Izabel, Salvador, BA, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Hospital Santa Izabel, Salvador, BA, Brazil. Hospital Santa Izabel, Salvador, BA, Brazil. Hospital Santa Izabel, Salvador, BA, Brazil. Hospital Santa Izabel, Salvador, BA, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. World Health Organization Collaborating Center for Reference and Research on Ar bovirus, Instituto Evandro Chagas, Fundação Nacional de Saúde, Ministério da Saúde, Belém, Brazil. Department of Pathology, Center for Biodefense and Emerging Infectious Diseases, University of Texas Medical Branch, Galveston. Department of Pathology, Center for Biodefense and Emerging Infectious Diseases, University of Texas Medical Br anch, Galveston. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Disease s, Yale School of Public Health, New Haven, Connecticut. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Multina tional Organization Network Sponsoring Translational and Epidemiological Research Initiative, José Silveira Foundation, Salvador, Brazil. Centro de Pesquisas Gonçalo Mon iz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. K U Leuven, Department of Microbiology and Immunology, Rega Institute for Medical Research, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium. Hospital Santa Izabel, Salvador, BA, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Faculdade de Medicina da Bahia, Univers idade Federal da Bahia, Salvador, Brazil.
Department of Biology Providence College Providence RI USA. Department of Biology Providence College Providence RI USA. Department of Ecology & Evolutionary Biology Ya le University New Haven CT USA. Department of Ecology & Evolutionary Biology Yale University New Haven CT USA. Department of Ecology & Evolutionary Biology Yale University Ne w Haven CT USA. Centro de Pesquisas Gonçalo Moniz Fundação Oswaldo Cruz Ministério da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Moniz Fundação Oswaldo Cruz Ministé rio da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Moniz Fundação Oswaldo Cruz Ministério da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Moniz Fundação Oswa ldo Cruz Ministério da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Moniz Fundação Oswaldo Cruz Ministério da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Mon iz Fundação Oswaldo Cruz Ministério da Saúde Salvador Brazil. Centro de Pesquisas Gonçalo Moniz Fundação Oswaldo Cruz Ministério da Saúde Salvador Brazil. Centro de Contr ole de Zoonoses Secretaria Municipal de Saúde Ministério da Saúde Salvador Brazil. Instituto de Saúde Coletiva Universidade Federal da Bahia, UFBA Salvador Brazil. D epartment of Epidemiology of Microbial Disease Yale School of Public Health New Haven CT USA. Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvad orBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA. Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Department of Ophthalmology, Hospital Geral Roberto Santos, Salvador, Brazil; Vision Institute, Department of Ophthalmology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Publ ic Health, New Haven, Connecticut. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil. Department of Ophthalmology, Hospital Geral Roberto San tos, Salvador, Brazil. Department of Arbovirology and Hemorrhagic Fevers, Evandro Chagas Institute, Ministry of Health, Ananindeua, Brazil. Vision Institute, Department of Ophthalmology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil. Vision Institute, Department of Ophthalmology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil. Electronic address: prof.belfort@clinicabelfort.com.br.
Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Sal vador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministé rio da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswa ldo Cruz,Ministério da Saúde,Salvador,Brazil. Institute of Integrative Biology,University of Liverpool,Liverpool,UK. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz ,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Funda ção Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Pesquisas Gon çalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Centro de Controle de Zoonoses,Secretaria Municipal de Saúde,Ministério da Saúde,Salvador,Brazil. I nstituto de Ciências da Saúde,Universidade Federal da Bahia,UFBA,Salvador,Brazil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Br azil. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil. Department of Epidemiology of Microbial Disease,Yale School of Public H ealth,New Haven,CT,USA. Institute of Integrative Biology,University of Liverpool,Liverpool,UK. Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Sal vador,Brazil.
Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fund ação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Department of Medicine, Stanford Univer sity School of Medicine, Stanford, California, United States of America. Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America. Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United Stat es of America. Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America. Section of Rheu matology, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Department of Neurology, Yale School of Medicine, New Haven, Connecticut, United States of Amer ica. Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America. Section of Rheumatology , Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America. Section of Infectious Diseases, Department of Internal Medicine , Yale School of Medicine, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Conn ecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Centro de Pesquisas Gonçalo Mon iz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Department of Medicine, Stanford University School of Medicine, Stanford, California, United States of America. Department of Microbiology and Immunology, Stan ford University School of Medicine, Stanford, California, United States of America; Veterans Affairs Palo Alto Health Care System, Palo Alto, California, United States of Amer ica. Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, California, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Louis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA emily.e.puckett@gmail.com. Louis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA. Louis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA. Xavier Center for Bioenvironmental Rese arch, Tulane University, New Orleans, LA 70112, USA. Clinical Research Unit, Oxford University, Hanoi, Vietnam. Department of Ecology and Evolutionary Biology, Yale Un iversity, PO Box 208106, New Haven, CT 06520-8106, USA. Instituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, Brazil. Ashworth Laboratories, Institute of Evo lutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, UK. Mathematical and Statistical Methods Group, Wageningen University, Droevendaals esteeg 1, 6708 PB Wageningen, The Netherlands. Federal Research Centre for Cultivated Plants, Institute for Plant Protection in Horticulture and Forests, Vertebrate Research, Julius Kühn Institute, Münster, Germany. Animal Health Centre, British Columbia Ministry of Agriculture, 1767 Angus Campbell Road, Abbotsford, British Columbia, Canada V3G 2M3. Ashworth Laboratories, Institute of Evolutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, UK. Laboratory of Epidemiol ogy and Public Health, Yale University, New Haven, CT, USA. Department of Medical Biochemistry and Microbiology, Zoonosis Science Center, Uppsala University, Uppsala, Swed en. Wildlife Zoonoses and Vector Borne Disease Research Group, Animal and Plant Health Agency (APHA), Woodham Lane, New Haw Surrey, UK. CNRS-CIRAD, Centre d'Infectiolo gie Christophe Mérieux du Laos, Vientiane, Lao PDR. Department of Anthropology, University of Auckland, Private Bag 92019, Auckland, New Zealand. School of Biological Sc iences, University of Auckland, Private Bag 92019, Auckland, New Zealand. School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand . Department of Statistics, University of Auckland, Private Bag 92019, Auckland, New Zealand. Department of Medical Biochemistry and Microbiology, Zoonosis Science C enter, Uppsala University, Uppsala, Sweden. Laboratorio de Ecologia de Roedores Urbanos, IEGEBA-CONICET, EGE-Facultad de Ciencias Exactas y Naturales, Universidad de Bueno s Aires Pabellon II, Ciudad Universitaria (C1428EHA), Buenos Aires, Argentina. School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, L oughborough LE12 5RD, UK. Louis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA jmunshisouth@fordham.edu.
Departments of Laboratory Medicine and Medicine (Infectious Diseases), Yale University School of Medicine, and Clinical Virology Laboratory, Yale New Haven Hospital, New Haven , CT; marie.landry@yale.edu. Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT; Director, Arbovirus Laboratory, Wadsworth Center, New York State Department of Health, and Professor, Biomedical Sciences, School of Public Hea lth, State University of New York at Albany, Albany, NY; Associate Professor, Department of Pathology and Member, Center for Biodefense and Emerging Infectious Diseases , Center for Tropical Diseases, and Institute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX.
Hospital Geral Roberto Santos, Secretaria Estadual da Saúde da Bahia, Salvador, Brazil. Hospital Geral Roberto Santos, Secretaria Estadual da Saúde da Bahia, Salvador, Brazil. Department of Pathology, Center for Biodefense and Emerging Infectious Diseases, Institute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, Te xas. Center for Tropical Diseases, University of Texas Medical Branch, Galveston, Texas. Hospital Geral Roberto Santos, Secretaria Estadual da Saúde da Bahia, Salvador, Brazil. Hospital São Rafael, Fundação Monte Tabor, Salvador, Brazil. Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas/SVS/MS, Ananindeua, Braz il. Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas/SVS/MS, Ananindeua, Brazil. Seção de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas/SVS/MS, Ananindeua, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut. Centro de Pesquisas Gonçalo Mon iz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brazil. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brazil. isador a.siqueira@bahia.fiocruz.br.
Central Laboratory of the State of Paraná, Curitiba, Paraná, Brazil. National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Preventi on, Atlanta, Georgia, United States of America. Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United Stat es of America. Department of Veterinary Medicine, Federal University of the State of Paraná, Curitiba, Paraná, Brazil. Department of Epidemiology of Microbial Diseases, Schoo l of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, S alvador, Bahia, Brazil. National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Faculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. School of Medicine, Federal University of Mato Grosso do Sul, Campo Grande, Brazil. F aculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. Faculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. F aculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. Faculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. F aculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. Faculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. F aculty of Health Sciences, Federal University of Grande Dourados, Dourados, Brazil. Faculty of Ambiental and Biological Sciences, Federal University of Grande Dourados, Do urados, Brazil. Department of Biochemical Pharmacy, Federal University of Mato Grosso do Sul, Campo Grande, Brazil. Oswaldo Cruz Foundation, Campo Grande, Brazil. School of Medicine, Federal University of Mato Grosso do Sul, Campo Grande, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil. Division of Inf ectious Diseases and Geographic Medicine, Stanford School of Medicine, Palo Alto, CA, USA. Faculty of Health Sciences, Federal University of Grande Dourados, Dourados, Br azil. juliocroda@gmail.com. Oswaldo Cruz Foundation, Campo Grande, Brazil. juliocroda@gmail.com.
Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiol ogy of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Center for Infectious Disease Modeling and Anal ysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale Univers ity, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut , United States of America. Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of Am erica. Department of Biomedical Sciences, College of Veterinary Medicine, Oregon State University, Corvallis, Oregon, United States of America. Center for Infectious D isease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Disease s, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Pediatric Infectious Diseases Department, Hospital Nacional de Niños "Dr. Carlos Sáenz Herrera" , San José, Costa Rica. Programa de Control de Vectores, Ministerio de Salud, San José, Costa Rica. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil. Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Departm ent of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Ecology and Evolu tionary Biology, Yale University, New Haven, Connecticut, United States of America.
Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA elsio.wunder@yale.edu. Gonçalo Moniz Research Center, Oswaldo Cruz Fou ndation, Brazilian Ministry of Health, Salvador, Brazil. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil. Institut Pasteur, Unité de Biologie des Spirochètes, Paris, France. D epartment of Medicine, David Geffen School of Medicine at University of California, Los Angeles, Los Angeles, California, USA. Division of Infectious Diseases, Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, USA. Division of Infectious Diseases, Department of Medicine, University of Californ ia San Diego School of Medicine, La Jolla, California, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil. Departm ent of Medicine, David Geffen School of Medicine at University of California, Los Angeles, Los Angeles, California, USA. Institut Pasteur, Unité de Biologie des Spiroch ètes, Paris, France. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil. Epidemiology of Microbial Disease Division, Yal e School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazili an Ministry of Health, Salvador, Bahia, 40296-710, Brazil. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-71 0, Brazil. Institut Pasteur, Unit of Biology of Spirochetes, 75724 Paris cedex 15, France. Department of Pathology and Laboratory Medicine, University of Texas Medical Sc hool at Houston, Houston, TX, 77030, USA. Department of Pathology and Laboratory Medicine, University of Texas Medical School at Houston, Houston, TX, 77030, USA. L aboratory of Molecular & Structural Microbiology, Institut Pasteur de Montevideo, Montevideo, 11400, Uruguay. Department of Pathology and Laboratory Medicine, University of Texas Medical School at Houston, Houston, TX, 77030, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-71 0, Brazil. Department of Microbiology and Immunology, West Virginia University, Morgantown, WV, 26506, USA. Laboratory of Molecular & Structural Microbiology, Inst itut Pasteur de Montevideo, Montevideo, 11400, Uruguay. Department of Structural Biology and Chemistry, Institute Pasteur, 75724 Paris cedex15, France. Institut Pasteur, Unit of Biology of Spirochetes, 75724 Paris cedex 15, France. Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. G onçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biolog y, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Department of E pidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Instituto de Biologia, Universidade Federal da Bahia, UFBA, Salvador, Brasil, 40.110-040 (SS). Centro de Pesquisas Gonçalo Mon iz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710. Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador, Brasil, 40.110-040. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Department of Epidemiology of M icrobial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Minis tério da Saúde, Salvador, Brasil, 40296-710. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of Amer ica, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Minis tério da Saúde, Salvador, Brasil, 40296-710. Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador, Brasil, 40.110-040.
From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square , Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiolog y of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone). fede rico.costa@ufba.br. From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone). From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence Coll ege, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); D epartment of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mar iani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern Author -if Affiliation -contains Yale -sep " " -element LastName Affiliation
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut 06520-8034, USA.
Wunder Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
Ko Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
Lindow Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Wunder Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Hagan Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Ko Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Ko Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health, Yale University, New Haven, U.S.A.
Emont Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Ko Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Ko Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Hernandez Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Shirvell Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Mariani Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Childs Department of Epidemiology of Microbial Disease Yale School of Public Health New Haven CT USA.
Ko Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
Caccone Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Ko Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Childs Department of Epidemiology of Microbial Disease,Yale School of Public Health,New Haven,CT,USA.
Lindow Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Wunder Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Min Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Mannam Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Srivastava Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Yao Section of Rheumatology, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Hacker Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.
Raddassi Department of Neurology, Yale School of Medicine, New Haven, Connecticut, United States of America.
Lee Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Montgomery Section of Rheumatology, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Shaw Section of Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Hagan Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Caccone Department of Ecology and Evolutionary Biology, Yale University, PO Box 208106, New Haven, CT 06520-8106, USA.
Ko Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
Landry Departments of Laboratory Medicine and Medicine (Infectious Diseases), Yale University School of Medicine, and Clinical Virology Laboratory, Yale New Haven Hospital, New Haven, CT; marie.landry@yale.edu.
Ko Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Casanovas-Massana Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ko Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
Urrego Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
Alfaro-Murillo Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Parpia Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Fitzpatrick Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Tamagnan Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ndeffo-Mbah Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Fish Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
Galvani Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.
Wunder Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA elsio.wunder@yale.edu. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
Ko Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
Wunder Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
Ko Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
Hacker Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511.
Diggle Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB.
Childs Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
Costa Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710. Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador, Brasil, 40.110-040.
Costa From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone). federico.costa@ufba.br.
Richardson From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Dion From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Mariani From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Pertile From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Burak From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Childs From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Ko From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Caccone From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern Author -if Affiliation -contains Yale -sep " " -element PMID LastName Affiliation
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut 06520-8034, USA.
Wunder Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
Ko Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
Lindow Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Wunder Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Hagan Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Ko Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
Ko Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health, Yale University, New Haven, U.S.A.
Emont Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Ko Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Ko Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Hernandez Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Shirvell Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Mariani Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Childs Department of Epidemiology of Microbial Disease Yale School of Public Health New Haven CT USA.
Ko Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
Caccone Department of Ecology & Evolutionary Biology Yale University New Haven CT USA.
Ko Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Childs Department of Epidemiology of Microbial Disease,Yale School of Public Health,New Haven,CT,USA.
Lindow Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Wunder Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Min Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Mannam Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Srivastava Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Yao Section of Rheumatology, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Hacker Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.
Raddassi Department of Neurology, Yale School of Medicine, New Haven, Connecticut, United States of America.
Lee Section of Pulmonary, Critical Care and Sleep Medicine, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Montgomery Section of Rheumatology, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Shaw Section of Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America.
Hagan Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
Caccone Department of Ecology and Evolutionary Biology, Yale University, PO Box 208106, New Haven, CT 06520-8106, USA.
Ko Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
Landry Departments of Laboratory Medicine and Medicine (Infectious Diseases), Yale University School of Medicine, and Clinical Virology Laboratory, Yale New Haven Hospital, New Haven, CT; marie.landry@yale.edu.
Ko Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Casanovas-Massana Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ko Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
Urrego Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
Alfaro-Murillo Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Parpia Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Fitzpatrick Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Tamagnan Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ndeffo-Mbah Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Fish Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
Galvani Center for Infectious Disease Modeling and Analysis, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America.
Wunder Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA elsio.wunder@yale.edu. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
Ko Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
Wunder Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
Ko Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
Hacker Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511.
Diggle Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB.
Childs Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511.
Ko Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
Costa Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom, L69 7ZB. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710. Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador, Brasil, 40.110-040.
Costa From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone). federico.costa@ufba.br.
Richardson From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Dion From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Mariani From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Pertile From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Burak From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Childs From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Ko From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
Caccone From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element MedlineCitation/PMID
ERROR: Unparsable XML element
28555073
28291747
28141801
28300969
28138046
28221118
27927858
28352293
27914834
27780498
27812211
27798305
27551005
27454521
27645785
27487084
27716170
27205899
27141082
27113476
27088272
27453682
26733693
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element MedlineCitation/PMID \
> -block Author -if Author -contains Ko -element Affiliation
ERROR: Unparsable XML element
28555073
28291747
28141801
28300969
28138046
28221118
27927858
28352293
27914834
27780498
27812211
27798305
27551005
27454521
27645785
27487084
27716170
27205899
27141082
27113476
27088272
27453682
26733693
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -if Author -contains Ko -sep " " -element Affiliation
ERROR: Unparsable XML element
28555073
28291747
28141801
28300969
28138046
28221118
27927858
28352293
27914834
27780498
27812211
27798305
27551005
27454521
27645785
27487084
27716170
27205899
27141082
27113476
27088272
27453682
26733693
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -if Author/LastName -contains Ko -sep " " -element Affiliation
ERROR: Unparsable XML element
28555073 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut 06520-8034, USA.
28291747 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
28141801 Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
28300969 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health, Yale University, New Haven, U.S.A.
28138046 Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28221118
27927858 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28352293 Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
27914834 Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27780498 Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil.
27812211 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
27798305 Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
27551005 Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
27454521
27645785 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27487084 Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
27716170 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
27205899 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
27141082 Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
27113476 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
27088272
27453682 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
26733693 From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |\xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -if Author/LastName -contains Ko -sep " " -element Affiliation
ERROR: Unparsable XML element
28555073 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut 06520-8034, USA.
28291747 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
28141801 Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
28300969 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health, Yale University, New Haven, U.S.A.
28138046 Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28221118
27927858 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28352293 Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
27914834 Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27780498 Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil.
27812211 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
27798305 Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
27551005 Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
27454521
27645785 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27487084 Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
27716170 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
27205899 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
27141082 Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
27113476 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
27088272
27453682 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
26733693 From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,2771617 0,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |\xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -if Author/LastName -contains K o -sep "\t" -element Affiliation >ko.txt
ERROR: Unparsable XML element
kn338@KN338-WIN7 ~
$ pwd
/cygdrive/c/Users/kn338
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,2791483 4,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27 088272,27453682,26733693 -format xml |\xtract -pattern PubmedArticle -element MedlineCitation/PMID -blo ck Author -if Author/LastName -contains Ko -sep " " -element Affiliation
ERROR: Unparsable XML element
28555073 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Hav en, Connecticut 06520-8034, USA.
28291747 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Have n, CT 06520, USA.
28141801 Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
28300969 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of P ublic Health, Yale University, New Haven, U.S.A.
28138046 Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseas es, Yale School of Public Health, New Haven, Connecticut.
28221118
27927858 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Sal vador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Have n, Connecticut.
28352293 Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil ; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
27914834 Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27780498 Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Br azil.
27812211 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Hav en, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Mi nistério da Saúde, Salvador, Bahia, Brazil.
27798305 Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
27551005 Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of M edicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
27454521
27645785 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Hav en, Connecticut.
27487084 Department of Epidemiology of Microbial Diseases, School of Public Health, Yale Univers ity, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foun dation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
27716170 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Hav en, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
27205899 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale Un iversity, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
27141082 Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Co nnecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, S alvador, Brazil.
27113476 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Have n, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health , Salvador, Bahia, 40296-710, Brazil.
27088272
27453682 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 Coll ege St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswa ldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
26733693 From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, R I 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salva dor 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biolog y, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biolo gy, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |\xtract -pattern PubmedArticle -element MedlineCitation/PMID -block Author -if Author/LastName -contains Ko -sep " " -element Affiliation
ERROR: Unparsable XML element
28555073 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut 06520-8034, USA.
28291747 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT 06520, USA.
28141801 Fiocruz, Gonçalo Moniz Research Institute, Brazilian Ministry of Health, Salvador, BA, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, United States of America.
28300969 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Salvador, Brasil. School of Public Health, Yale University, New Haven, U.S.A.
28138046 Fundação Oswaldo Cruz, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28221118
27927858 Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Fundação Oswaldo Cruz/MS, Salvador, Brazil. Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
28352293 Centro de Pesquisas Gonçalo MonizFundação Oswaldo CruzMinistério da SaúdeSalvadorBrazil; Department of Epidemiology of Microbial DiseaseYale School of Public HealthNew HavenCTUSA.
27914834 Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Salvador, Brazil; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27780498 Centro de Pesquisas Gonçalo Moniz,Fundação Oswaldo Cruz,Ministério da Saúde,Salvador,Brazil.
27812211 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brazil.
27798305 Laboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
27551005 Professor and Chair, Department of Epidemiology (Microbial Diseases) and Professor of Medicine (Infectious Diseases), Yale University School of Medicine, New Haven, CT;
27454521
27645785 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
27487084 Department of Epidemiology of Microbial Diseases, School of Public Health, Yale University, New Haven, Connecticut, United States of America. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, Brazil.
27716170 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Oswaldo Cruz Foundation, Salvador, Brazil.
27205899 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Bahia, Brasil.
27141082 Epidemiology of Microbial Disease Division, Yale School of Public Health, New Haven, Connecticut, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Brazil.
27113476 Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, 06520, USA. Gonçalo Moniz Research Center, Oswaldo Cruz Foundation, Brazilian Ministry of Health, Salvador, Bahia, 40296-710, Brazil.
27088272
27453682 Department of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College St, New Haven, United States of America, CT 06511. Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador, Brasil, 40296-710.
26733693 From the Centro de Pesquisas Gonçalo Moniz, Fundação Oswaldo Cruz, Ministério da Saúde, Salvador 40296-710, Brazil (Costa and Pertile); Providence College, 1 Cunningham Square, Providence, RI 02918 (Richardson and Burak); Instituto de Saúde Coletiva, Universidade Federal da Bahia, UFBA, Salvador 40.110-040, Brazil (Costa); Department of Epidemiology of Microbial Disease, Yale School of Public Health, 60 College Street, New Haven, CT 06511 (Costa, Childs, and Ko); Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (Costa); Department of Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520-8106 (Dion, Mariani, and Caccone).
kn338@KN338-WIN7 ~
$ efetch -db pubmed -id 28555073,28291747,28141801,28300969,28138046,28221118,27927858,28352293,27914834,27780498,27812211,27798305,27551005,27454521,27645785,27487084,27716170,27205899,27141082,27113476,27088272,27453682,26733693 -format xml |\xtract -pattern Author -if Identifier -sep " " -element LastName,Initials Identifier
Lindow JC http://orcid.org/0000-0003-3235-3698
Popper SJ http://orcid.org/0000-0002-2001-945X
Lee PJ http://orcid.org/0000-0001-9906-1628
Hagan JE http://orcid.org/0000-0002-1837-6319
Kim CC http://orcid.org/0000-0001-6474-8227
Puckett EE http://orcid.org/0000-0002-9325-4629
Munshi-South J http://orcid.org/0000-0002-8067-4341
Casanovas-Massana A http://orcid.org/0000-0002-3301-6143
Croda J http://orcid.org/0000-0002-6665-6825
Parpia AS 0000-0002-9083-1929
kn338@KN338-WIN7 ~
$ efetch -db pubmed -query "yale school of public health[ad] -format xml |\xtract -pattern Author -if Identifier -sep " " -element LastName,Initials Identifier > ^C
kn338@KN338-WIN7 ~
$ efetch -db pubmed -query "yale school of public health[ad] AND ("2016/01/01"[PDAT] : "2016/12/31"[PDAT])" -format xml |\xtract -pattern Author -if Identifier -sep " " -element LastName,Initials Identifier > orcids.txt
Unknown option: query
Format Selection
-format Format of record or report
-mode text, xml, asn.1, json
-style withparts, conwithfeat
Direct Record Selection
-db Database name
-id Unique identifier or accession number
Sequence Range
-seq_start First sequence position to retrieve
-seq_stop Last sequence position to retrieve
-strand Strand of DNA to retrieve
Gene Range
-chr_start Sequence range from 0-based coordinates
-chr_stop in gene docsum GenomicInfoType object
Sequence Flags
-complexity 0 = default, 1 = bioseq, 3 = nuc-prot set
-extend Extend sequence retrieval in both directions
-extrafeat Bit flag specifying extra features
Miscellaneous
-raw Skip database-specific XML modifications
Format Examples
-db -format -mode Report Type
___ _______ _____ ___________
(all)
docsum DocumentSummarySet XML
docsum json DocumentSummarySet JSON
full Same as native except for mesh
uid Unique Identifier List
url Entrez URL
xml Same as -format full -mode xml
bioproject
native BioProject Report
native xml RecordSet XML
biosample
native BioSample Report
native xml BioSampleSet XML
biosystems
native xml Sys-set XML
gds
native xml RecordSet XML
summary Summary
gene
gene_table Gene Table
native Gene Report
native asn.1 Entrezgene ASN.1
native xml Entrezgene-Set XML
tabular Tabular Report
homologene
alignmentscores Alignment Scores
fasta FASTA
homologene Homologene Report
native Homologene List
native asn.1 HG-Entry ASN.1
native xml Entrez-Homologene-Set XML
mesh
full Full Record
native MeSH Report
native xml RecordSet XML
nlmcatalog
native Full Record
native xml NLMCatalogRecordSet XML
pmc
medline MEDLINE
native xml pmc-articleset XML
pubmed
abstract Abstract
medline MEDLINE
native asn.1 Pubmed-entry ASN.1
native xml PubmedArticleSet XML
(sequences)
acc Accession Number
est EST Report
fasta FASTA
fasta xml TinySeq XML
fasta_cds_aa FASTA of CDS Products
fasta_cds_na FASTA of Coding Regions
ft Feature Table
gb GenBank Flatfile
gb xml GBSet XML
gbc xml INSDSet XML
gene_fasta FASTA of Gene
gp GenPept Flatfile
gp xml GBSet XML
gpc xml INSDSet XML
gss GSS Report
ipg Identical Protein Report
ipg xml IPGReportSet XML
native text Seq-entry ASN.1
native xml Bioseq-set XML
seqid Seq-id ASN.1
snp
chr Chromosome Report
docset Summary
fasta FASTA
flt Flat File
native asn.1 Rs ASN.1
native xml ExchangeSet XML
rsr RS Cluster Report
ssexemplar SS Exemplar List
sra
native xml EXPERIMENT_PACKAGE_SET XML
runinfo xml SraRunInfo XML
structure
mmdb Ncbi-mime-asn1 strucseq ASN.1
native MMDB Report
native xml RecordSet XML
taxonomy
native Taxonomy List
native xml TaxaSet XML
kn338@KN338-WIN7 ~
$ esearch -db pubmed -query "yale school of public health[ad] AND ("2016/01/01"[PDAT] : "2016/12/31"[PDAT])" | efetch -format xml |\xtract -pattern Author -if Identifier -sep " " -element LastName,Initials Identifier > orcids.txt
kn338@KN338-WIN7 ~
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