Skip to content
@pughlab

Pugh Lab

The Pugh Laboratory at the Princess Margaret Cancer Centre

Pinned Loading

  1. PughLabReadme PughLabReadme Public

    Documentation of best practices, coding tips, and ongoing projects developed by the Pugh Lab.

    2

  2. cbioportal cbioportal Public

    Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    Java 2

  3. ConsensusCruncher ConsensusCruncher Public

    ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

    Jupyter Notebook 21 10

  4. VisCap VisCap Public

    VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data.…

    R 22 12

  5. bamgineer bamgineer Public

    Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

    Python 37 14

  6. crescent crescent Public

    The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

    R 8 4

Repositories

Showing 10 of 109 repositories
  • ctims-matchminer-engine Public
    pughlab/ctims-matchminer-engine’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Jan 31, 2025
  • ctims Public

    CTIMS project

    pughlab/ctims’s past year of commit activity
    CSS 2 Apache-2.0 10 8 7 Updated Jan 30, 2025
  • IRIS_TCR Public
    pughlab/IRIS_TCR’s past year of commit activity
    R 0 0 0 0 Updated Jan 29, 2025
  • oncographer Public

    OncoGrapher: standardized, graph-based, clinical data abstraction tool leveraging the MOHCCN data standard

    pughlab/oncographer’s past year of commit activity
    TypeScript 5 1 0 0 Updated Jan 28, 2025
  • CompareFragmentSize Public

    Compare fragment size of variant- and reference-allele containing reads in a BAM file

    pughlab/CompareFragmentSize’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jan 27, 2025
  • cbioportal-docs Public
    pughlab/cbioportal-docs’s past year of commit activity
    0 0 0 0 Updated Jan 24, 2025
  • hbc Public
    pughlab/hbc’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 21, 2025
  • CapTCR-TIL-Tracking Public
    pughlab/CapTCR-TIL-Tracking’s past year of commit activity
    R 0 0 0 0 Updated Jan 17, 2025
  • INSPIRE_TCR Public

    Pan-cancer assessment of the tumour and systemic T-cell receptor repertoire dynamics in patients treated with pembrolizumab

    pughlab/INSPIRE_TCR’s past year of commit activity
    R 0 0 0 0 Updated Jan 15, 2025
  • cbioportal Public Forked from cBioPortal/cbioportal

    cBioPortal for Cancer Genomics

    pughlab/cbioportal’s past year of commit activity
    Java 0 AGPL-3.0 593 0 12 Updated Jan 14, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…