_config.yaml

title: 'Progenetix - Structural Cancer Genomics Resources'
label: '' # Progenetix :: Info
tagline: 'Progenetix Documentation Pages'
description: |
  Code & info website of the progenetix.org cancer genomics information resource : baudisgroup @ UZH & SIB
show_downloads: true
google_analytics: UA-572981-2
plugins:
 - jekyll-seo-tag
keywords:
  - genomics
  - cancer
  - CGH
  - arrays
  - Beacon
  - Baudis
  - DNA
  - 'data sharing'
  - 'FAIR'
  - GA4GH
  - Zurich
  - SIB
  - Swiss Institute of Bioinformatics
  - UZH
  - University of Zurich
site_domain_name: info.progenetix.org
url: 'http://info.progenetix.org'
google_search_code: >
  <script async src="https://cse.google.com/cse.js?cx=29234d8c2ee43f948"></script>
  <div class="gcse-search"></div>
baseurl: ""
site_parent_link: 'http://progenetix.org'
site_parent_link_name: 'Progenetix Data'

# instructions for processing specific directories

include:        # usually only pages in / and /_posts are "seen" => processed
  - categories  # contains landing pages for each category
  - tags        # contains landing pages for each tag

# Collections are used to organise pages into logical groups; these do not need
# to have a relation to the "categories", though this is highly recommended
# Collection directories reside in "/collections_dir/_(collection name)".

collections:
  doc:
    output: true
    permalink: /doc/:path/
  schemas:
    output: true
    permalink: /schemas/:path/

collections_dir: pages  # optional; here, all collections are inside "/pages"

exclude:
  - docs

# navigation blocks can be used to separate different categories and add e.g.
# external link block(s), in combination with a properly modified layout

nav_cat_blocks: # comma-separated "label,type,label_visibility"
  General: 'General,categories,hide'
  related_sites: 'Related Sites,related_sites,show'
  github_projects: 'Github Projects,github_projects,show'

General:
  'http://docs.progenetix.org/': Documentation Home
  'http://docs.progenetix.org/news/': News
  'http://docs.progenetix.org/use-cases/': Use Case Examples
  'http://docs.progenetix.org/services/': 'Services & API'
  'http://docs.progenetix.org/classifications-and-ontologies/': 'Classifications, Ontologies & Standards'
  'http://docs.progenetix.org/publication-collection/': 'Publication Collection'
  'http://docs.progenetix.org/changelog/': 'Changelog'
  'http://docs.progenetix.org/beaconplus/': 'Beacon+ &amp; bycon'
  'http://docs.progenetix.org/technical-notes/': 'Technical Notes'
  'http://progenetix.org': Progenetix Data
  'http://progenetix.org/subsets/biosubsets#is_sub': Cancer CNV Profiles
  'http://progenetix.org/biosamples/#is_sub': Search Samples
  'http://progenetix.org/publications/': Publication DB

related_sites:
  'Baudisgroup @ UZH': 'http://info.baudisgroup.org'
  'Beacon<span style="color: red; font-weight: 800;">+</span>': 'http://beacon.progenetix.org/ui/'
  'SchemaBlocks {S}[B]': 'http://schemablocks.org'
  'Beacon Project': 'http://beacon-project.io'

github_projects:
  baudisgroup: 'http://github.com/baudisgroup/'
  progenetix: 'http://github.com/progenetix/'
  'ELIXIR Beacon': 'https://github.com/ga4gh-beacon/'

categories-date-sorted:
  - news
  - statistics
  - about
  - documentation

tags-date-sorted:
  - API
  - documentation

cloud_tags:
  - API
  - article
  - Beacon
  - Beacon_v2
  - BeaconPlus
  - bycon
  - code
  - identifiers
  - documentation
  - downloads
  - graphics
  - GA4GH
  - maps
  - ontologies
  - licensing
  - statistics
  - schemas
  - services
  - tools
  - website
  - Perl
  - R
  - JavaScript
  - Python
  - TCGA

# additional Jekyll instructions

plugins:
 - jekyll-seo-tag
type: website
navigation_max_items: 4 # number of shown links in current category
emptyArray: []          # dummy element for array initialisation

# local build specific
include:
  - .htaccess
# markdown: kramdown