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29 Open 690 Closed
29 Open 690 Closed
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Issues list

Problem GNM DEmo: AttributeError: 'C KDTree' object has no attribute 'neighbor_get_count' Bug A problem with the code. C extensions Issues related to C extensions not being built properly.
#2049 opened Feb 23, 2025 by dlbeveridge
5
Download problem on MacOS Bug A problem with the code.
#2036 opened Feb 9, 2025 by dlbeveridge
@AnthonyBogetti
2
How to obtain the full Kirchhoff matrix in GNM Prody - protein Unresolved The issue was unresolved. May or may not be a bug.
#2032 opened Feb 1, 2025 by german12341212
2
Error assessing Drugability in DruGui Bug A problem with the code.
#2030 opened Jan 27, 2025 by MigueLugo
@AnthonyBogetti @anupam-banerjee
1
writePDB truncates 4 letters residues to 3 letters Unresolved The issue was unresolved. May or may not be a bug.
#2023 opened Jan 6, 2025 by Cventura18
2
Problems reading .msaio on Mac M2 Bug A problem with the code. C extensions Issues related to C extensions not being built properly.
#2019 opened Dec 18, 2024 by karenjgonzalez
3
Potential issue with conda package. Bug A problem with the code. C extensions Issues related to C extensions not being built properly.
#2005 opened Nov 28, 2024 by vincrichard
4
Problem with calcADPAxes Unresolved The issue was unresolved. May or may not be a bug.
#1975 opened Oct 15, 2024 by karolamik13
@AnthonyBogetti
2
ExtendModel Nodes and Atoms Incompatible Unresolved The issue was unresolved. May or may not be a bug.
#1962 opened Sep 25, 2024 by rks5854
1
21
ImportError While Using the ProDy Interface in NMWizard Unresolved The issue was unresolved. May or may not be a bug.
#1961 opened Sep 19, 2024 by DaddyDaddyFish
9
searchPfam fails to parse XML Unresolved The issue was unresolved. May or may not be a bug.
#1933 opened Aug 12, 2024 by NicholasMcCarthy
@AnthonyBogetti @anupam-banerjee
2
ImportError: druggability package was not found Unresolved The issue was unresolved. May or may not be a bug.
#1917 opened Jul 19, 2024 by accibio
1
Ensemble superpose Unresolved The issue was unresolved. May or may not be a bug.
#1912 opened Jul 12, 2024 by Yago52
@AnthonyBogetti @sahags
1
How to set the path for ProDy in VMD Unresolved The issue was unresolved. May or may not be a bug.
#1898 opened May 13, 2024 by kiran923
2
ADP axes has a problem too Unresolved The issue was unresolved. May or may not be a bug.
#1873 opened Apr 17, 2024 by jamesmkrieger
addMissingAtoms PDBFixer fails with InSty/WatFinder tutorial file Bug A problem with the code.
#1866 opened Apr 16, 2024 by jamesmkrieger
6
Bug in PQR parser Unresolved The issue was unresolved. May or may not be a bug.
#1855 opened Mar 29, 2024 by VonBoss
@AnthonyBogetti
12
Failure to correctly parse resnames with 4 letters Unresolved The issue was unresolved. May or may not be a bug.
#1843 opened Mar 14, 2024 by karolamik13
3
error on tutorial Evolution of sequence, structure and dynamics with Evol and SignDy Unresolved The issue was unresolved. May or may not be a bug.
#1841 opened Mar 13, 2024 by Armanda87
9
most versions of adjustText don't work Unresolved The issue was unresolved. May or may not be a bug.
#1682 opened Mar 28, 2023 by jamesmkrieger
2
trimPDBEnsemble doesn't work when inputs to buildPDBEnsemble are sele Unresolved The issue was unresolved. May or may not be a bug.
#1663 opened Feb 15, 2023 by jamesmkrieger
3
account for PDB FTP deprecation Bug A problem with the code.
#1605 opened Nov 3, 2022 by jamesmkrieger
6
Error message when running Prody in VMD 1.9.4a53 Windows 10 Bug A problem with the code.
#1599 opened Oct 27, 2022 by tanoury1
@avantador700
2
showOccupancies should support atoms kwarg or extract them from ensemble Bug A problem with the code.
#1590 opened Sep 19, 2022 by jamesmkrieger
1
Unable to submit ProDy job from VMD even after designating path to prody.exe Unresolved The issue was unresolved. May or may not be a bug.
#1573 opened Jul 21, 2022 by christos-efthymiou
14
ProTip! What’s not been updated in a month: updated:<2025-02-22.